CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AFY53316.1

Basic Information

GenBank IDAFY53316.1
FamilyGH8
Sequence Length420
UniProt IDK9R772(100,100)Download
Average pLDDT?88.47
CAZy50 ID67018
CAZy50 RepNo, AFZ01983.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID373994
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyRivulariaceae
GenusRivularia
SpeciesRivularia sp. PCC 7116

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNYLTKIAAI  CIILALNGCS  WGDSANSVEK  PVKKSWQSST  TISVVNNDSV  RFVSSLPEST60
PNRELLVESW  DSYRRRFIQR  DGRVIDYEAS  DRSTSEGQAY  AMLRAVLIDD  SATFALTLNW120
GENNLRRLED  GKPVDNLWAW  KWGRKSDGSW  GSIDNNFASD  GDIDAITALI  LASRRWNRPE180
YLELAKTKLQ  DLWKYSTVVG  QDKRYLLPGP  KAAFVKDSSS  IILNPSYFAP  YAFRLFAQVD240
SERDWLSLVD  SSYEVLEDSR  HISAVNLPSD  WVVLDAKTGK  YRPLPNDSLL  SSAYSFDAYR300
VWWRIALDAS  WFNSTRARNY  LESSIGHPLK  LWSEKSSIPA  RINLEGEALV  NYEATSQYAM360
LYAASRLIQP  SLAEELLEKK  LLPRYQQEVW  DDNEAYYTQN  LAWLGLLSPS  AISPKLLQSN420
420

Predicted 3D structure by AlphaFold2 with pLDDT = 88.47 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(69-407)

MNYLTKIAAI  CIILALNGCS  WGDSANSVEK  PVKKSWQSST  TISVVNNDSV  RFVSSLPEST60
PNRELLVESW  DSYRRRFIQR  DGRVIDYEAS  DRSTSEGQAY  AMLRAVLIDD  SATFALTLNW120
GENNLRRLED  GKPVDNLWAW  KWGRKSDGSW  GSIDNNFASD  GDIDAITALI  LASRRWNRPE180
YLELAKTKLQ  DLWKYSTVVG  QDKRYLLPGP  KAAFVKDSSS  IILNPSYFAP  YAFRLFAQVD240
SERDWLSLVD  SSYEVLEDSR  HISAVNLPSD  WVVLDAKTGK  YRPLPNDSLL  SSAYSFDAYR300
VWWRIALDAS  WFNSTRARNY  LESSIGHPLK  LWSEKSSIPA  RINLEGEALV  NYEATSQYAM360
LYAASRLIQP  SLAEELLEKK  LLPRYQQEVW  DDNEAYYTQN  LAWLGLLSPS  AISPKLLQSN420
420

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help