CAZyme3D

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Entry ID

Information for CAZyme ID: AFV90342.1

Basic Information

GenBank IDAFV90342.1
FamilyGH2
Sequence Length624
UniProt IDK7S6Y9(100,100)Download
Average pLDDT?92.35
CAZy50 ID41899
CAZy50 RepNo, UYG17188.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1171373
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusAcidipropionibacterium
SpeciesAcidipropionibacterium acidipropionici

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMNDALAHDL  QPVGITPGDE  PVPRPEYPRP  GAARQNWMNL  NGAWQFEIDR  GDSGRERGVP60
GRDLAGSIIV  PFAPESRLSG  VEDTDFMAAV  WYRRTVTIPE  SWGSADDDVH  VLVHFEAVDH120
DATVWADGVE  VARHRGGFTP  FTADLHGVCE  PGGTVTLVVR  ARDPRKGAQA  RGKQSTEYAN180
DGCFYTRTTG  IWQTVWAEPV  PSTRMGRPHV  VPDLAAAGFR  VSVPLTANRA  GWTVRAELTS240
PRGDRVARAV  TRADLDREPA  LWLPIPPDQA  LPWAPDHPDL  YGLHLELRDE  GGHIVDRLAS300
YAGLRSVSVR  DRQLLLNGEP  IFQRLVLDQG  YWPQSLMTAP  DDQALRADIE  LGMRAGFNGA360
RLHQKVFEER  YLYHADRLGY  LVWGEFPDWG  ANTGGPRGDH  QHPTSTFAAQ  WAEELERDRS420
HPSIVGWCPL  NETFQELTDR  FTDLDDVMAA  MVSAARLADG  TRPVLDSSGY  SHRDPRTDVW480
DAHLYEQDPA  RFAELVSGLA  EGRPFANPGD  GTTWSLPYTG  QPYFISEFGG  IWWDPEAAAQ540
ARGDDQYESW  GYGPRVASEA  DFHDRFAGLT  GVLLADPQMF  GYCYTQLTDV  FQERNGIYRF600
DRSEKLDVGA  VRAAQLRPAA  YEEE624

Predicted 3D structure by AlphaFold2 with pLDDT = 92.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(33-482)

MMNDALAHDL  QPVGITPGDE  PVPRPEYPRP  GAARQNWMNL  NGAWQFEIDR  GDSGRERGVP60
GRDLAGSIIV  PFAPESRLSG  VEDTDFMAAV  WYRRTVTIPE  SWGSADDDVH  VLVHFEAVDH120
DATVWADGVE  VARHRGGFTP  FTADLHGVCE  PGGTVTLVVR  ARDPRKGAQA  RGKQSTEYAN180
DGCFYTRTTG  IWQTVWAEPV  PSTRMGRPHV  VPDLAAAGFR  VSVPLTANRA  GWTVRAELTS240
PRGDRVARAV  TRADLDREPA  LWLPIPPDQA  LPWAPDHPDL  YGLHLELRDE  GGHIVDRLAS300
YAGLRSVSVR  DRQLLLNGEP  IFQRLVLDQG  YWPQSLMTAP  DDQALRADIE  LGMRAGFNGA360
RLHQKVFEER  YLYHADRLGY  LVWGEFPDWG  ANTGGPRGDH  QHPTSTFAAQ  WAEELERDRS420
HPSIVGWCPL  NETFQELTDR  FTDLDDVMAA  MVSAARLADG  TRPVLDSSGY  SHRDPRTDVW480
DAHLYEQDPA  RFAELVSGLA  EGRPFANPGD  GTTWSLPYTG  QPYFISEFGG  IWWDPEAAAQ540
ARGDDQYESW  GYGPRVASEA  DFHDRFAGLT  GVLLADPQMF  GYCYTQLTDV  FQERNGIYRF600
DRSEKLDVGA  VRAAQLRPAA  YEEE624

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help