CAZyme3D

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Entry ID

Information for CAZyme ID: AFU59606.1

Basic Information

GenBank IDAFU59606.1
FamilyGT2
Sequence Length299
UniProt IDK0IE13(100,100)Download
Average pLDDT?91.46
CAZy50 ID147871
CAZy50 RepNo, AFK24855.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1237085
KingdomArchaea
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrososphaerales
FamilyNitrososphaeraceae
GenusNitrososphaera
SpeciesCandidatus Nitrososphaera gargensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRVTVGIPA  YNEERNIVNL  LRSLEGQQPL  ISEVIISDDS  SDRTPDLVRE  FAKSSPLAIT60
LLHHETRRGA  AEAWNEILYK  AASDVIVFYD  ADTIPHPSCT  EQLALRISGN  MALCASNSQP120
VQAAGVAGRA  SVFISNWLRS  IRQSGLSQYT  VMGRALAINA  STAKKIQIPS  DMIAIDLYLQ180
CRILEMGLDV  AYNDDAVVYF  KPPSSMQDLA  SQVVRAVNGH  NQIKDMVSRL  GIGLPSHVAI240
AQALKNAAMD  PIGAASTVIG  YSLMPYYMSR  LKHTDSAKWH  TADSSKTIDY  QQLKVRYSD299

Predicted 3D structure by AlphaFold2 with pLDDT = 91.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(6-110)+GT2(85-241)

MRRVTVGIPA  YNEERNIVNL  LRSLEGQQPL  ISEVIISDDS  SDRTPDLVRE  FAKSSPLAIT60
LLHHETRRGA  AEAWNEILYK  AASDVIVFYD  ADTIPHPSCT  EQLALRISGN  MALCASNSQP120
VQAAGVAGRA  SVFISNWLRS  IRQSGLSQYT  VMGRALAINA  STAKKIQIPS  DMIAIDLYLQ180
CRILEMGLDV  AYNDDAVVYF  KPPSSMQDLA  SQVVRAVNGH  NQIKDMVSRL  GIGLPSHVAI240
AQALKNAAMD  PIGAASTVIG  YSLMPYYMSR  LKHTDSAKWH  TADSSKTIDY  QQLKVRYSD299

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help