CAZyme3D

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Entry ID

Information for CAZyme ID: AFS83774.1

Basic Information

GenBank IDAFS83774.1
FamilyGT2
Sequence Length390
UniProt IDK0BEA2(100,100)Download
Average pLDDT?83.12
CAZy50 ID101447
CAZy50 RepNo, SMH70222.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1229909
KingdomArchaea
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesCandidatus Nitrosopumilus sediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQSNEKMQKS  NTQISIIIPT  YNESQNIVQI  LKSIKDNLPK  NLITQAIVID  DNSPDGTGKI60
VEDYLKNFKK  MANYTIEIIH  RKAKDGLGSA  ILNGIQKAKG  DTIVVMDSDF  SHPPQIIPKL120
IESIKKYQFD  IAVASRYISG  GKIQGWPLKR  KLMSKFATLI  AKKGLGIETK  DPMSGFFAFK180
KNIIKELNID  AIGYKILLEI  LVKTKGVNIK  EVPYTFQDRE  LGSSKLTIKT  ILDYYKSVWK240
LYRYGKPIEK  QENRSSVKFI  SKAARFYTVG  ASGFVVNYMI  SLLFTGGISD  MWYLHANIIG300
IIASITTNFI  LNKAWTFGDR  DFRIKKTISQ  YGKFAMFSSI  GALIQLGMVY  LLVDSVEISY360
PLALILAVMT  AAFGNFVLNK  KWTFNEKLVS  390

Predicted 3D structure by AlphaFold2 with pLDDT = 83.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(15-186)

MQSNEKMQKS  NTQISIIIPT  YNESQNIVQI  LKSIKDNLPK  NLITQAIVID  DNSPDGTGKI60
VEDYLKNFKK  MANYTIEIIH  RKAKDGLGSA  ILNGIQKAKG  DTIVVMDSDF  SHPPQIIPKL120
IESIKKYQFD  IAVASRYISG  GKIQGWPLKR  KLMSKFATLI  AKKGLGIETK  DPMSGFFAFK180
KNIIKELNID  AIGYKILLEI  LVKTKGVNIK  EVPYTFQDRE  LGSSKLTIKT  ILDYYKSVWK240
LYRYGKPIEK  QENRSSVKFI  SKAARFYTVG  ASGFVVNYMI  SLLFTGGISD  MWYLHANIIG300
IIASITTNFI  LNKAWTFGDR  DFRIKKTISQ  YGKFAMFSSI  GALIQLGMVY  LLVDSVEISY360
PLALILAVMT  AAFGNFVLNK  KWTFNEKLVS  390

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help