CAZyme3D

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Entry ID

Information for CAZyme ID: AFS53215.1

Basic Information

GenBank IDAFS53215.1
FamilyGT2
Sequence Length445
UniProt IDJ9Z9L3(100,100)Download
Average pLDDT?87.96
CAZy50 ID4380
CAZy50 RepNo, AOV17901.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1048260
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusLeptospirillum
SpeciesLeptospirillum ferriphilum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFKKLPNEGE  LFYGVIQDGN  DLWNASTFCG  SCTVLRRKAL  NEIQGFAVDT  VTEDAHTSIR60
LHRLGWESAY  LNLPQAAGLA  TPSLSAHIRQ  RIRWARGMIQ  IFRIENPLLA  RGLTLAQKLC120
YLNGMLFFLS  SLPRIIFLTA  PLAYLYFGVR  IFDADAYSIA  SYAFPTIALS  LLANAAINGR180
HRHSFWNQVY  ETTLAPYIFL  PTLLAMVRPD  LGTFNVTAKE  GRIEKEFYDR  RIARPFIILW240
VLNLGGLISG  ILRYTGGFGE  IPTIVLTLAW  TVHNLLIIGT  TLAVGWERTQ  RRFRPRINVT300
YPVRLTAPDG  QYVYGETEDM  SDDGVRIRLL  KSASLRTGED  VRVEIPFLDR  IHEFPAEIVG360
MDEFSIRLNF  HPLTLEEEKN  RVLLLYGRAD  AWVKLGLSEK  EDSVLKSLWE  VALFAIIGQG420
RALKGIFWSS  GPKISRTPQT  LGKVP445

Predicted 3D structure by AlphaFold2 with pLDDT = 87.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(26-146)

MFKKLPNEGE  LFYGVIQDGN  DLWNASTFCG  SCTVLRRKAL  NEIQGFAVDT  VTEDAHTSIR60
LHRLGWESAY  LNLPQAAGLA  TPSLSAHIRQ  RIRWARGMIQ  IFRIENPLLA  RGLTLAQKLC120
YLNGMLFFLS  SLPRIIFLTA  PLAYLYFGVR  IFDADAYSIA  SYAFPTIALS  LLANAAINGR180
HRHSFWNQVY  ETTLAPYIFL  PTLLAMVRPD  LGTFNVTAKE  GRIEKEFYDR  RIARPFIILW240
VLNLGGLISG  ILRYTGGFGE  IPTIVLTLAW  TVHNLLIIGT  TLAVGWERTQ  RRFRPRINVT300
YPVRLTAPDG  QYVYGETEDM  SDDGVRIRLL  KSASLRTGED  VRVEIPFLDR  IHEFPAEIVG360
MDEFSIRLNF  HPLTLEEEKN  RVLLLYGRAD  AWVKLGLSEK  EDSVLKSLWE  VALFAIIGQG420
RALKGIFWSS  GPKISRTPQT  LGKVP445

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help