CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AFO98073.1

Basic Information

GenBank IDAFO98073.1
FamilyCBM48, GH13_8
Sequence Length685
UniProt IDV9KJA3(100,100)Download
Average pLDDT?95.99
CAZy50 ID937
CAZy50 RepNo, CAG7908015.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID7868
KingdomEukaryota
PhylumChordata
ClassChondrichthyes
OrderChimaeriformes
FamilyCallorhinchidae
GenusCallorhinchus
SpeciesCallorhinchus milii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPVGAVAAEP  QLEPLLQIDP  NLKPFSEELR  RRYKKFHTLL  KSIEENEGSL  DQFSKAYETF60
GIHSQGNTIY  CKEWAPGAEA  VFLVGDFNQW  NTSSHPYKKL  EFGKWELRIP  PDARGFSPIP120
HKSKLKVLIH  NKKSELLYRI  SPWAKHVVPS  EKNITYDWLH  WDPAQPYLCI  QPRPKRPRSL180
RIYEAHVGIA  SPEGKIASYT  NFTRNMLPRI  KDLGYNAIQM  MAIMEHAYYA  SFGYQITSFF240
AASSRYGTPD  ELKQLVDTAH  SMGIVVLLDV  VHSHASTNTD  DGLNEFDGTD  SCFFHSGSRG300
THTLWDSRLF  NYSHWEVLRF  LLANLRWWME  EYHFDGFRFD  GVTSMLYHHH  GLAVGFSGDY360
SEYFGLQVDD  ESVVYLMLSN  HLLHSLYPDC  ITIAEDVSGM  PTLCRPISEG  GAGFDYRLAM420
AIPDKWIQML  KELKDEDWNM  GNIVFTLSNR  RYGEKCIAYA  ESHDQALVGD  KTLAFWLMDA480
EMYTNMSVLS  PLTLKIDRGL  QLHKMIRLIT  HGLGGEGYLN  FIGNEFGHPE  WLDFPRKGNN540
ESYHYARRQF  NLVDDANLRY  KYLYTFDRAM  NKTEEKYAWL  ASQPAYVSEK  HESNKVIAFE600
RANLLFIFNF  NSQKSFTDYR  VGVERPGKYK  IVLDTDASEF  GGHTRLDNKT  EFFTESMPHN660
NRASSVMVYL  PSRTAIILAN  VDDSN685

Predicted 3D structure by AlphaFold2 with pLDDT = 95.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(60-146)+GH13_8(231-524)

MPVGAVAAEP  QLEPLLQIDP  NLKPFSEELR  RRYKKFHTLL  KSIEENEGSL  DQFSKAYETF60
GIHSQGNTIY  CKEWAPGAEA  VFLVGDFNQW  NTSSHPYKKL  EFGKWELRIP  PDARGFSPIP120
HKSKLKVLIH  NKKSELLYRI  SPWAKHVVPS  EKNITYDWLH  WDPAQPYLCI  QPRPKRPRSL180
RIYEAHVGIA  SPEGKIASYT  NFTRNMLPRI  KDLGYNAIQM  MAIMEHAYYA  SFGYQITSFF240
AASSRYGTPD  ELKQLVDTAH  SMGIVVLLDV  VHSHASTNTD  DGLNEFDGTD  SCFFHSGSRG300
THTLWDSRLF  NYSHWEVLRF  LLANLRWWME  EYHFDGFRFD  GVTSMLYHHH  GLAVGFSGDY360
SEYFGLQVDD  ESVVYLMLSN  HLLHSLYPDC  ITIAEDVSGM  PTLCRPISEG  GAGFDYRLAM420
AIPDKWIQML  KELKDEDWNM  GNIVFTLSNR  RYGEKCIAYA  ESHDQALVGD  KTLAFWLMDA480
EMYTNMSVLS  PLTLKIDRGL  QLHKMIRLIT  HGLGGEGYLN  FIGNEFGHPE  WLDFPRKGNN540
ESYHYARRQF  NLVDDANLRY  KYLYTFDRAM  NKTEEKYAWL  ASQPAYVSEK  HESNKVIAFE600
RANLLFIFNF  NSQKSFTDYR  VGVERPGKYK  IVLDTDASEF  GGHTRLDNKT  EFFTESMPHN660
NRASSVMVYL  PSRTAIILAN  VDDSN685

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help