CAZyme3D

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Entry ID

Information for CAZyme ID: AFO83530.1

Basic Information

GenBank IDAFO83530.1
FamilyCBM45
Sequence Length1228
UniProt IDV9K6M5(100,100)Download
Average pLDDT?80.48
CAZy50 ID6516
CAZy50 RepNo, BBG95884.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3983
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderMalpighiales
FamilyEuphorbiaceae
GenusManihot
SpeciesManihot esculenta

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MASSNTAGVR  HFQLVDGMEL  QVLASALPKK  NWFIPSEQSP  GSKSYKQGAL  QTPFTKSGEL60
YVVNIELRGP  KFHAVEFVLK  DSCSNRWLKL  NNGNFRIDLP  EHDESSVHPP  ISKDSIENKA120
YQTWESKGRP  TGTPQQKQDY  DAAVRELQNQ  LTKGISLNEL  QNSCISERTK  TVTDNKGQSR180
FAVPRSYFQR  HDVDQWLHKH  SLGHAKSTNM  TFPTLMDLVE  GTTGGDKVIS  RQTHHVGNYE240
IVVITKIINS  DHHVLVAINT  MGAVVLHWGV  SKLSPAEWLA  PPSDVLPERS  KLLDGACQTY300
FREISTRKGS  FQIVDINLQQ  RNFFGIQFVI  WTGGSWIKNN  GANFSVLLKS  INPSGKVDGD360
GRETLKWLLD  EIYRRENEAE  RSLMHRFNIA  TELTERCKLE  GELGLIGILI  WLRFMACRHL420
TWNKNYNVKP  REISEAQDKF  TKLLQKIYVN  QPNDREIVRL  IMLCVGRGGQ  GDVGQRIRDE480
ILVIQRNNEC  KTGMMEEWHQ  KLHNNSSSDD  VIICEALLNY  VRCGFRIDVY  WQTLNANGLT540
KEKLASYDRP  ILSEPRLNTH  AKEGLIRDLT  MYLKTLKAVH  SGADLESAIE  TCLGPSSKNL600
VDSRIELRPV  LLTSSERAKD  LLFLDLALDS  AVRTTMERGL  KELSFNQLPD  IIFYISFVLE660
NLCLSTVNNE  DLIYCTKDWY  RVCESYKAND  VQWALQAKAI  LDRVQLVLAD  RSLNFQKKVQ720
PSVQYLGNLL  GIKKWVIDIF  TEELVRAGSA  AILSTLINRL  DPTFRRVANL  GCWQVISPVE780
VCGFITSVHE  LLTVQNKVYR  KPTVIIANRV  TGEEEIPDGV  VAVLTPDMPD  ILSHVSIRAR840
NSKVCFATCF  DQDILRNLKL  KEGKAISISM  KSMNLIIRDI  NGSNLSLNTS  ASTSIPRAVS900
FKRKIFCGKF  AISVEEFTAD  MVGAKSFNIK  FLRERVPSWI  KIPISVALTF  GAFETVMSDN960
INKDIASRIS  VFYKSVLGGD  FTNLQAIQDA  IQQMNAPLSL  IYELKSKMRS  SRIPWPGDES1020
EERWNRAWQA  IKKVWASKWN  ERAYVSCRKA  NLNHDNLRMA  VLIQEVISGD  YAFVIHTKNP1080
LSGDASEIYT  EIVKGLGETL  VGAYPGRAMS  FITKKSNLRF  PIVTGYPSKN  IGLYSKKSII1140
FRSDSNGEDL  EGYAGAGLYD  SVLMDEEEKV  ILDYSNDRLI  VDKAFQTSIF  SKIAEAGKII1200
EGLYGCAQDI  EGVVKDGVIY  VVQARPQI1228

Predicted 3D structure by AlphaFold2 with pLDDT = 80.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM45(29-95)+CBM45(266-344)

MASSNTAGVR  HFQLVDGMEL  QVLASALPKK  NWFIPSEQSP  GSKSYKQGAL  QTPFTKSGEL60
YVVNIELRGP  KFHAVEFVLK  DSCSNRWLKL  NNGNFRIDLP  EHDESSVHPP  ISKDSIENKA120
YQTWESKGRP  TGTPQQKQDY  DAAVRELQNQ  LTKGISLNEL  QNSCISERTK  TVTDNKGQSR180
FAVPRSYFQR  HDVDQWLHKH  SLGHAKSTNM  TFPTLMDLVE  GTTGGDKVIS  RQTHHVGNYE240
IVVITKIINS  DHHVLVAINT  MGAVVLHWGV  SKLSPAEWLA  PPSDVLPERS  KLLDGACQTY300
FREISTRKGS  FQIVDINLQQ  RNFFGIQFVI  WTGGSWIKNN  GANFSVLLKS  INPSGKVDGD360
GRETLKWLLD  EIYRRENEAE  RSLMHRFNIA  TELTERCKLE  GELGLIGILI  WLRFMACRHL420
TWNKNYNVKP  REISEAQDKF  TKLLQKIYVN  QPNDREIVRL  IMLCVGRGGQ  GDVGQRIRDE480
ILVIQRNNEC  KTGMMEEWHQ  KLHNNSSSDD  VIICEALLNY  VRCGFRIDVY  WQTLNANGLT540
KEKLASYDRP  ILSEPRLNTH  AKEGLIRDLT  MYLKTLKAVH  SGADLESAIE  TCLGPSSKNL600
VDSRIELRPV  LLTSSERAKD  LLFLDLALDS  AVRTTMERGL  KELSFNQLPD  IIFYISFVLE660
NLCLSTVNNE  DLIYCTKDWY  RVCESYKAND  VQWALQAKAI  LDRVQLVLAD  RSLNFQKKVQ720
PSVQYLGNLL  GIKKWVIDIF  TEELVRAGSA  AILSTLINRL  DPTFRRVANL  GCWQVISPVE780
VCGFITSVHE  LLTVQNKVYR  KPTVIIANRV  TGEEEIPDGV  VAVLTPDMPD  ILSHVSIRAR840
NSKVCFATCF  DQDILRNLKL  KEGKAISISM  KSMNLIIRDI  NGSNLSLNTS  ASTSIPRAVS900
FKRKIFCGKF  AISVEEFTAD  MVGAKSFNIK  FLRERVPSWI  KIPISVALTF  GAFETVMSDN960
INKDIASRIS  VFYKSVLGGD  FTNLQAIQDA  IQQMNAPLSL  IYELKSKMRS  SRIPWPGDES1020
EERWNRAWQA  IKKVWASKWN  ERAYVSCRKA  NLNHDNLRMA  VLIQEVISGD  YAFVIHTKNP1080
LSGDASEIYT  EIVKGLGETL  VGAYPGRAMS  FITKKSNLRF  PIVTGYPSKN  IGLYSKKSII1140
FRSDSNGEDL  EGYAGAGLYD  SVLMDEEEKV  ILDYSNDRLI  VDKAFQTSIF  SKIAEAGKII1200
EGLYGCAQDI  EGVVKDGVIY  VVQARPQI1228

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help