CAZyme3D

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Entry ID

Information for CAZyme ID: AFL78598.1

Basic Information

GenBank IDAFL78598.1
FamilyGH163
Sequence Length731
UniProt IDI3YNN0(100,100)Download
Average pLDDT?93.55
CAZy50 ID31766
CAZy50 RepNo, QYR10515.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID679935
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes finegoldii
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/I3YNN0.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLFRWIFVV  SLLLVSSGVR  AQTRLTRNGK  PAARIVVAQQ  TAADLTAAQL  LQRFVRESTG60
ATLPLLHDVT  PRKGDILIGA  SDTAGLAEDG  FRLRTQDGVL  RISSGGDKGA  VYGVMTLLER120
YLGLDYFAAG  VYDLDRNPTV  TLPAMDFAEN  PAFRYRQSQG  YGMAQDSVYR  LALRLEEPRD180
IFAGGLWVHT  FNSLLPASVY  GAEHPEYYSF  INGERRPGRA  SQWCLTNDEL  FELVAAKVDS240
IFRANPGMNI  ISISQNDSNF  TYCRCEECEK  VNRYEGAPSG  NYIRFLNKLA  ERFPDKEFST300
LAYLFTMQPP  KHVKPLPNVN  IMLCDIDCDR  EVPLTDNASG  REFIEAMEGW  AALSDNIFVW360
DYGINFDNMV  APFPNFPILK  PNIGLFRRNH  ATMHFSQIGG  SYGGDFSEMR  TYVVAKLMWN420
PDQDTDSLML  RFMRGYYGPA  APYIYQYEKL  LEGALLAGGQ  RLWIYDSPVS  HKDGMLNAAC480
RKRYGELFDC  AERAVAGDSV  LLRRVRLTRL  PLMYSNLEIA  RTTADKDLGA  VVSELDAFEK540
YVTQFGVKTL  NERNNSPQEY  CRLYRERYLP  AENSNLALGA  RIVWIDAPAE  KYRASGEKTL600
TDGLFGGASF  VESWTGWEGK  DGAFVVDLGR  DVAFSTVETD  FLHQLGQWIL  LPRSVRYSVS660
SDNADWTPFG  QVEFPEDQSV  PVKFVPAAVT  AAQPVRARYV  KVEIEGVKTC  PPWHYGVGCP720
CWFFLDEVTV  K731

Predicted 3D structure by AlphaFold2 with pLDDT = 93.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH163(194-447)+CBM32(613-706)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help