CAZyme3D

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Entry ID

Information for CAZyme ID: AFK65332.1

Basic Information

GenBank IDAFK65332.1
FamilyCBM61, GH53
Sequence Length1234
UniProt IDI0BGN8(100,100)Download
Average pLDDT?83.17
CAZy50 ID7147
CAZy50 RepNo, AEI40749.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID997761
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFVKKSTAL  LLVAAMALTW  VPLGARAAEQ  ESVIRINPIE  GLSPDFIKGS  DVSMLSQIKE60
SGGRYHDGGV  EKDALQILKD  HGTNWVRLRI  WNNPVDPDGN  PLGGGNNDLA  RTVETAVYAK120
ELGLKVLLDF  HYSDFWADPG  KQFKPAAWEG  LSGAELEQAV  YDYTDSVIRE  LKAQDAMPDM180
VQIGNETNGG  MIWPDGKTWQ  QSAGEEIGGY  DGFANLLKAG  IRAVEDNDPE  DQTRIMLHLA240
DGGDNDLYRR  VFDALTLRGV  NFDIIGLSFY  PYWHGTLEEL  KHNMNDISTR  YDKDVIVVET300
AYAHTLENGD  GFTNIFGPAE  ESAGGYKATV  QGQAQAVRDI  MNAVHEVPGG  RGLGVFYWEQ360
DWIPVEGAGW  KTGEGNGWDN  QAMFDFEGNA  LPSLDVYNLV  SAPLEGEPYA  AELEYVQPVT420
LDITVGGELQ  LPAAVKGEFS  DDSIRLLPVD  WEAVSPEDLT  KPGTLRIAGT  IEGASLQAEA480
VVTVEGTRNY  VTNAGFEAGD  FSGWTLSGDT  EALDAEKSSA  PAGNAYSGDY  SLHYYLDRPY540
TFKVEQKVTG  LPDGTYTAAV  RTQGGGGEKS  LKLFAVNAAG  DKLTADIVNT  AWHEWKHIVI600
PNITVTGGEL  TLGVEADANN  GSWGSIDEFE  LYTDHSQVTL  SAPEEVEPGS  EFSVGVGVDG660
LVNVIGSQDL  QLSYDRELFQ  YVGAESSEAG  TVVAATYDAD  AGTVHLVTQH  AEGKAANTES720
LQVKFKAQHI  EREGTIGVTS  AEWTALSSGK  KITPSALGSV  TVSVYGAANH  EPGGGTGGSN780
GGGNGGDGNG  GGTGGNHGGG  NSGGTDGNHG  GGTDGNTGGG  TDNGSSNDDD  DDNSGNGNGN840
NGSGNGNSSN  GNAAGKPAYE  AATGTATAKL  SADEAAKRLK  AEGGQVLKLE  IPAVEGAKAY900
AQELPAALLQ  EQPDLRIELV  TPFGSVSLPG  SMLAGSKGLG  SGPVTVSIRT  VDPSELKDEA960
LKGKLGGKPV  IDLTVLANGQ  PVAWNNPDAP  VTVSIPYKPN  AAEAQHPEYL  TVWYLNANGE1020
AEAVPTSHWN  AKTGLLTFQT  THFSAYAAAY  DKRSFSDLSH  VGWAAQAVEA  LAAKGVIQGT1080
SDTEFAPDAP  VTRAEFLQML  VRAAGLTASF  DSNFSDVART  DYFYDAAGIA  KKLGVAGGRE1140
NGVFAPSERI  TREDLMVLTV  RALEKAGRWK  NTGGSGLEAF  SDASTVAGYA  ADAAASLVQA1200
GVINGRGGVL  APKEATTRAE  AAVILYRALQ  VSEQ1234

Predicted 3D structure by AlphaFold2 with pLDDT = 83.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH53(47-396)+CBM61(489-631)+SLH(1055-1096)+SLH(1114-1154)+SLH(1180-1221)

MRFVKKSTAL  LLVAAMALTW  VPLGARAAEQ  ESVIRINPIE  GLSPDFIKGS  DVSMLSQIKE60
SGGRYHDGGV  EKDALQILKD  HGTNWVRLRI  WNNPVDPDGN  PLGGGNNDLA  RTVETAVYAK120
ELGLKVLLDF  HYSDFWADPG  KQFKPAAWEG  LSGAELEQAV  YDYTDSVIRE  LKAQDAMPDM180
VQIGNETNGG  MIWPDGKTWQ  QSAGEEIGGY  DGFANLLKAG  IRAVEDNDPE  DQTRIMLHLA240
DGGDNDLYRR  VFDALTLRGV  NFDIIGLSFY  PYWHGTLEEL  KHNMNDISTR  YDKDVIVVET300
AYAHTLENGD  GFTNIFGPAE  ESAGGYKATV  QGQAQAVRDI  MNAVHEVPGG  RGLGVFYWEQ360
DWIPVEGAGW  KTGEGNGWDN  QAMFDFEGNA  LPSLDVYNLV  SAPLEGEPYA  AELEYVQPVT420
LDITVGGELQ  LPAAVKGEFS  DDSIRLLPVD  WEAVSPEDLT  KPGTLRIAGT  IEGASLQAEA480
VVTVEGTRNY  VTNAGFEAGD  FSGWTLSGDT  EALDAEKSSA  PAGNAYSGDY  SLHYYLDRPY540
TFKVEQKVTG  LPDGTYTAAV  RTQGGGGEKS  LKLFAVNAAG  DKLTADIVNT  AWHEWKHIVI600
PNITVTGGEL  TLGVEADANN  GSWGSIDEFE  LYTDHSQVTL  SAPEEVEPGS  EFSVGVGVDG660
LVNVIGSQDL  QLSYDRELFQ  YVGAESSEAG  TVVAATYDAD  AGTVHLVTQH  AEGKAANTES720
LQVKFKAQHI  EREGTIGVTS  AEWTALSSGK  KITPSALGSV  TVSVYGAANH  EPGGGTGGSN780
GGGNGGDGNG  GGTGGNHGGG  NSGGTDGNHG  GGTDGNTGGG  TDNGSSNDDD  DDNSGNGNGN840
NGSGNGNSSN  GNAAGKPAYE  AATGTATAKL  SADEAAKRLK  AEGGQVLKLE  IPAVEGAKAY900
AQELPAALLQ  EQPDLRIELV  TPFGSVSLPG  SMLAGSKGLG  SGPVTVSIRT  VDPSELKDEA960
LKGKLGGKPV  IDLTVLANGQ  PVAWNNPDAP  VTVSIPYKPN  AAEAQHPEYL  TVWYLNANGE1020
AEAVPTSHWN  AKTGLLTFQT  THFSAYAAAY  DKRSFSDLSH  VGWAAQAVEA  LAAKGVIQGT1080
SDTEFAPDAP  VTRAEFLQML  VRAAGLTASF  DSNFSDVART  DYFYDAAGIA  KKLGVAGGRE1140
NGVFAPSERI  TREDLMVLTV  RALEKAGRWK  NTGGSGLEAF  SDASTVAGYA  ADAAASLVQA1200
GVINGRGGVL  APKEATTRAE  AAVILYRALQ  VSEQ1234

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help