CAZyme3D

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Entry ID

Information for CAZyme ID: AFK65197.1

Basic Information

GenBank IDAFK65197.1
FamilyGH50
Sequence Length1143
UniProt IDI0BT02(100,100)Download
Average pLDDT?88.84
CAZy50 ID9136
CAZy50 RepNo, AFC33186.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID997761
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMDKIRVRTG  LLLSAILIGL  PALPPPAASA  ETRPPAVIDE  LQSWDVAYKR  SSTLSLLSNM60
TNTDDTTRVQ  RSAAYNEYLI  YQAPYGFGSF  TVYTYVNELY  KPYDHLQFFT  SSDGVNYQEV120
IAQQYEDGGH  LNLLVYEASD  LPAGARYLKI  RYSGGVILKS  PSIGKVVLGS  PASVQASVYS180
GIAALGTQVA  LSTPTAGASI  YYTTDGTDPK  TSSARKLYTA  PLDIPASEVL  DLAAHAEITD240
GMGRKIGGRI  SRFNYAAMGP  EDIRVAAAAD  TMVDEAQPDK  AFGSAQNLGV  RHSRVKDAYF300
TFSLQNFNAL  SDTAKLLLHG  YASDSTREPA  SLQLYPAAGG  WDEASVTYRS  RPALLSDTPL360
AVKPLAYGLP  GWMQFDVTEY  AREQKALGRT  SITLALRNGT  QGTTQIASRE  TGDRAPFLKI420
TSGGGLSPSG  VVDGMDSFAL  LYKRSNILIS  TNDTPYFAGD  GSRFTRLSTQ  PGFIVYRLES480
GVRSFMVSSY  FYTGIPIVHN  RLYTSADGVT  YKELAATVYP  SGSAAGNWQQ  YIYEASSLPE540
GTQYVKVEMS  GDSKSWTPQL  SRASLNQHTS  SVQVNTAPVD  SSLKVELSTP  SAPAQIFFRT600
DGEGGFKTYP  GPITLSGYHT  IEAYAVKNGL  EASPVRHFKI  NATGQAQIDR  YGQVISTDFA660
GKVRSDEELA  ADAAADEAYY  ASLQAPANRD  AYGGLKGSSW  TYGIPKTGFF  DIRRAGGRKV720
MTTPEGNVYF  SLGMNGITPN  ETYTKVTGRE  HNFEWIPQFT  GEYRAAFLGS  QDNFSYYLAN780
KFRKSGRIPS  TVSFYTEAVD  RLKKWGFNGA  GAWTPVQVVR  GQSFPYTVML  PMASVTAGKL840
DGLSLFDIFA  PGAAEQMDKA  FAAALPALKD  DPMLIGYFID  NEYDYHKFHT  AVPKLKGHTA900
MKRKLVDMLR  SQYVTMEAFN  ASWATPYTSF  DQLYDAELTV  RPGQAYLDMD  AFFRLYLDTF960
YGTVSRLFRQ  YDGNHLLLGD  RWITMTAANV  RVRGLLAEAS  GKYLDAISIN  HYSAQLDKDM1020
LNDVHTKSGG  KAILLSEFSF  GTAEQGLKPI  VPGSAASQHE  RQLRYRTYVE  GAAALGYVVG1080
AHWFDYVDQA  AAGRYWEGYG  GERYNSGLVN  VADRPYKQLL  EGIMATHSKI  YDVVMGKTGP1140
FQE1143

Predicted 3D structure by AlphaFold2 with pLDDT = 88.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(647-1131)

MMDKIRVRTG  LLLSAILIGL  PALPPPAASA  ETRPPAVIDE  LQSWDVAYKR  SSTLSLLSNM60
TNTDDTTRVQ  RSAAYNEYLI  YQAPYGFGSF  TVYTYVNELY  KPYDHLQFFT  SSDGVNYQEV120
IAQQYEDGGH  LNLLVYEASD  LPAGARYLKI  RYSGGVILKS  PSIGKVVLGS  PASVQASVYS180
GIAALGTQVA  LSTPTAGASI  YYTTDGTDPK  TSSARKLYTA  PLDIPASEVL  DLAAHAEITD240
GMGRKIGGRI  SRFNYAAMGP  EDIRVAAAAD  TMVDEAQPDK  AFGSAQNLGV  RHSRVKDAYF300
TFSLQNFNAL  SDTAKLLLHG  YASDSTREPA  SLQLYPAAGG  WDEASVTYRS  RPALLSDTPL360
AVKPLAYGLP  GWMQFDVTEY  AREQKALGRT  SITLALRNGT  QGTTQIASRE  TGDRAPFLKI420
TSGGGLSPSG  VVDGMDSFAL  LYKRSNILIS  TNDTPYFAGD  GSRFTRLSTQ  PGFIVYRLES480
GVRSFMVSSY  FYTGIPIVHN  RLYTSADGVT  YKELAATVYP  SGSAAGNWQQ  YIYEASSLPE540
GTQYVKVEMS  GDSKSWTPQL  SRASLNQHTS  SVQVNTAPVD  SSLKVELSTP  SAPAQIFFRT600
DGEGGFKTYP  GPITLSGYHT  IEAYAVKNGL  EASPVRHFKI  NATGQAQIDR  YGQVISTDFA660
GKVRSDEELA  ADAAADEAYY  ASLQAPANRD  AYGGLKGSSW  TYGIPKTGFF  DIRRAGGRKV720
MTTPEGNVYF  SLGMNGITPN  ETYTKVTGRE  HNFEWIPQFT  GEYRAAFLGS  QDNFSYYLAN780
KFRKSGRIPS  TVSFYTEAVD  RLKKWGFNGA  GAWTPVQVVR  GQSFPYTVML  PMASVTAGKL840
DGLSLFDIFA  PGAAEQMDKA  FAAALPALKD  DPMLIGYFID  NEYDYHKFHT  AVPKLKGHTA900
MKRKLVDMLR  SQYVTMEAFN  ASWATPYTSF  DQLYDAELTV  RPGQAYLDMD  AFFRLYLDTF960
YGTVSRLFRQ  YDGNHLLLGD  RWITMTAANV  RVRGLLAEAS  GKYLDAISIN  HYSAQLDKDM1020
LNDVHTKSGG  KAILLSEFSF  GTAEQGLKPI  VPGSAASQHE  RQLRYRTYVE  GAAALGYVVG1080
AHWFDYVDQA  AAGRYWEGYG  GERYNSGLVN  VADRPYKQLL  EGIMATHSKI  YDVVMGKTGP1140
FQE1143

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help