CAZyme3D

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Entry ID

Information for CAZyme ID: AFJ97275.1

Basic Information

GenBank IDAFJ97275.1
FamilyGH17
Sequence Length374
UniProt IDI2EC78(100,100)Download
Average pLDDT?89.15
CAZy50 ID105138
CAZy50 RepNo, ABD32329.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3981
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderMalpighiales
FamilyEuphorbiaceae
GenusHevea
SpeciesHevea brasiliensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAISSSTSGT  SSSLPSRTTV  MLLLIFFTAS  LGITDAQVGV  CYGMQGNNLP  SVSEVIALYK60
QSNIKRMRIY  DPNQAVLEAL  RGSNIELILG  VPNSDLQSLT  NPSNANSWVQ  KNVRGFWSSV120
RIRYIAVATK  LVPVNGGTAW  LAQFVLPAMR  NIHDAIRSAG  LQDQIKVSTA  IDLTLVGNSY180
PPSAGAFRDD  VRSYLDPIIG  FLSSIRSPLL  ANIYPYFTYA  DNPRDISLPY  ALFTSPSVVV240
WDGQRGYKNL  FDATLDALYS  ALERASGGSL  EVVVSESGWP  SAGAFAATFD  NGRTYLSNLI300
QHVKGGTPKR  PNRAIETYLF  AMFDENKKQP  EVEKHSGLFF  PDKRPKYNLN  FGAEKNWDIS360
TEHDATILFL  KSDM374

Predicted 3D structure by AlphaFold2 with pLDDT = 89.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(38-351)

MAISSSTSGT  SSSLPSRTTV  MLLLIFFTAS  LGITDAQVGV  CYGMQGNNLP  SVSEVIALYK60
QSNIKRMRIY  DPNQAVLEAL  RGSNIELILG  VPNSDLQSLT  NPSNANSWVQ  KNVRGFWSSV120
RIRYIAVATK  LVPVNGGTAW  LAQFVLPAMR  NIHDAIRSAG  LQDQIKVSTA  IDLTLVGNSY180
PPSAGAFRDD  VRSYLDPIIG  FLSSIRSPLL  ANIYPYFTYA  DNPRDISLPY  ALFTSPSVVV240
WDGQRGYKNL  FDATLDALYS  ALERASGGSL  EVVVSESGWP  SAGAFAATFD  NGRTYLSNLI300
QHVKGGTPKR  PNRAIETYLF  AMFDENKKQP  EVEKHSGLFF  PDKRPKYNLN  FGAEKNWDIS360
TEHDATILFL  KSDM374

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help