CAZyme3D

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Entry ID

Information for CAZyme ID: AFJ60112.1

Basic Information

GenBank IDAFJ60112.1
FamilyCBM50, GH18
Sequence Length426
UniProt IDI2C0D8(100,100)Download
Average pLDDT?95.62
CAZy50 ID80301
CAZy50 RepNo, AHN23468.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1155777
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus velezensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRGDTLSAI  AARYRTAANV  IAEANKLPNP  NTLVVGQTLV  IPIEGQYYEV  KQGDTLASIA60
GRFHISAAEL  ARVNGIQPGT  TLRVGTRLYI  PQQANKPDIE  SNAYIEPRGT  SVSANLQQAA120
REASPYLTYL  GAFSFQVQRN  GTLKEPPLTN  LKSISDRHNT  ALMMIITNLE  NDAFSDELGR180
LILNDNTVKT  KLFQEIVSTA  KKHGFRDIHF  DFEYLRPQDR  EAYNRFLREA  RTIFHREGWK240
ISTALAPKTS  ATQAGKWYEA  HDYRAHGEIV  DFVVIMTYEW  GYSGGPAQAV  SPIGPVRNVI300
EYALTEMPSS  KIVMGQNMYG  YDWTLPFKQG  TTAKAVSPQQ  AIALAARHKV  DIQYDETAQA360
PFFRYTDENQ  RRHEVWFEDA  RSIQAKFNLI  KELHLRGISY  WKLGLSFPQN  WLLLNDQFHI420
VKETFR426

Predicted 3D structure by AlphaFold2 with pLDDT = 95.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(2-42)+CBM50(48-91)+GH18(127-404)

MKRGDTLSAI  AARYRTAANV  IAEANKLPNP  NTLVVGQTLV  IPIEGQYYEV  KQGDTLASIA60
GRFHISAAEL  ARVNGIQPGT  TLRVGTRLYI  PQQANKPDIE  SNAYIEPRGT  SVSANLQQAA120
REASPYLTYL  GAFSFQVQRN  GTLKEPPLTN  LKSISDRHNT  ALMMIITNLE  NDAFSDELGR180
LILNDNTVKT  KLFQEIVSTA  KKHGFRDIHF  DFEYLRPQDR  EAYNRFLREA  RTIFHREGWK240
ISTALAPKTS  ATQAGKWYEA  HDYRAHGEIV  DFVVIMTYEW  GYSGGPAQAV  SPIGPVRNVI300
EYALTEMPSS  KIVMGQNMYG  YDWTLPFKQG  TTAKAVSPQQ  AIALAARHKV  DIQYDETAQA360
PFFRYTDENQ  RRHEVWFEDA  RSIQAKFNLI  KELHLRGISY  WKLGLSFPQN  WLLLNDQFHI420
VKETFR426

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help