CAZyme3D

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Entry ID

Information for CAZyme ID: AFG34964.1

Basic Information

GenBank IDAFG34964.1
FamilyGH42
Sequence Length614
UniProt IDH9UBS1(100,100)Download
Average pLDDT?96.97
CAZy50 ID49908
CAZy50 RepNo, QAV32603.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID771875
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyFervidobacteriaceae
GenusFervidobacterium
SpeciesFervidobacterium pennivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDIYGADYYP  EHWDRSFWKK  HVDLMKVYGI  EWVRIGEFMW  SVVEPRNGEF  DFSLLDEAIE60
LLSENGIKII  LGTPTATPPA  WLVSKYPEIL  PVDWNGRVRG  FGSRRHYSPN  SKAYLEYALR120
IVEQYASRYG  DAIDVWQIDN  EFGCHGTTYS  FTNEDLVAFR  EWLKEKYGTI  ENLNKHWGTV180
FWSQTYNSWD  EIVFPINTPT  FENPHQMLDI  YRFMSDSFIR  FLKSQVEIIR  KYSSKPITHN240
FMVDFMDLDY  RRMARYVDFV  SWDNYIATEE  YDPLRQSANH  SLMRSLKHQP  FLVIEQQPAR300
VNWRQVNENY  EPEYLAMWTK  QAYLNGAMGV  MPFRFDQIRF  GAEQYHAGLL  DYYGRPTKRL360
EAYSKVKNQT  PGVITPKPEV  AIYFDYENEW  IHRINHLNRN  FKYWDAIVDI  YKAVKNLGYN420
AEFVFNEDEV  EGYNVLIVPY  ASYISEEFIE  KIKKFEGPVY  LTAMSSIKDK  YNWLTERMPW480
HLVDEFGIEV  VDFGGIKEEK  GYLFSQCVTT  LFWKDELEVL  DAKVIGSFEN  GAPLVTVKNN540
RYYVASVLDE  NGWKLLLSEN  LRPRVLGKGY  ELVNVERDSR  ELTGVLNTLP  TENKLYIDGS600
LHVLKPFEFR  FVER614

Predicted 3D structure by AlphaFold2 with pLDDT = 96.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH42(7-368)+GH164(218-539)

MDIYGADYYP  EHWDRSFWKK  HVDLMKVYGI  EWVRIGEFMW  SVVEPRNGEF  DFSLLDEAIE60
LLSENGIKII  LGTPTATPPA  WLVSKYPEIL  PVDWNGRVRG  FGSRRHYSPN  SKAYLEYALR120
IVEQYASRYG  DAIDVWQIDN  EFGCHGTTYS  FTNEDLVAFR  EWLKEKYGTI  ENLNKHWGTV180
FWSQTYNSWD  EIVFPINTPT  FENPHQMLDI  YRFMSDSFIR  FLKSQVEIIR  KYSSKPITHN240
FMVDFMDLDY  RRMARYVDFV  SWDNYIATEE  YDPLRQSANH  SLMRSLKHQP  FLVIEQQPAR300
VNWRQVNENY  EPEYLAMWTK  QAYLNGAMGV  MPFRFDQIRF  GAEQYHAGLL  DYYGRPTKRL360
EAYSKVKNQT  PGVITPKPEV  AIYFDYENEW  IHRINHLNRN  FKYWDAIVDI  YKAVKNLGYN420
AEFVFNEDEV  EGYNVLIVPY  ASYISEEFIE  KIKKFEGPVY  LTAMSSIKDK  YNWLTERMPW480
HLVDEFGIEV  VDFGGIKEEK  GYLFSQCVTT  LFWKDELEVL  DAKVIGSFEN  GAPLVTVKNN540
RYYVASVLDE  NGWKLLLSEN  LRPRVLGKGY  ELVNVERDSR  ELTGVLNTLP  TENKLYIDGS600
LHVLKPFEFR  FVER614

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help