CAZyme3D

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Entry ID

Information for CAZyme ID: AFE05425.1

Basic Information

GenBank IDAFE05425.1
FamilyGH171
Sequence Length396
UniProt IDH8MR04(100,100)Download
Average pLDDT?94.83
CAZy50 ID59403
CAZy50 RepNo, ADV63316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1144275
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyMyxococcaceae
GenusCorallococcus
SpeciesCorallococcus coralloides

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKVKTGLDV  WAAQGFSALK  GKRVGAIVNP  TSVDSRFRHL  ADLLAGTDGV  TLAALFGPEH60
GIRGEAQYMV  AVDEARDRKT  GVPVHSLYGS  TFESLSPRQE  WLKGLDALVF  DIQDVGSRYY120
TYVYTMALAM  KAAAQARVAF  YVLDRPNPLD  GVTLEGNLVG  EKFRSFVGLY  ALPNRHGMTA180
GELARLFNAQ  EGFGCDLTVV  PCEGWTRDMY  WSDTGLPFLP  PSPNMPTADT  ALVYPGMCQL240
EGTNVSEGRG  TCRPFEQFGA  PWVDTDQLMA  RLDKERLPGV  AFRPVGFTPT  FDKYTGQSCS300
GAFIHVTDRK  AYQPLRTGIA  ITQALHDIGP  GHFAWRADAY  EFVEDVPAFD  LLCGTDQVRR360
GIEEGWSLDR  MLEGFEAQAE  AFRKRREPAL  LYASSR396

Predicted 3D structure by AlphaFold2 with pLDDT = 94.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(24-392)

MTKVKTGLDV  WAAQGFSALK  GKRVGAIVNP  TSVDSRFRHL  ADLLAGTDGV  TLAALFGPEH60
GIRGEAQYMV  AVDEARDRKT  GVPVHSLYGS  TFESLSPRQE  WLKGLDALVF  DIQDVGSRYY120
TYVYTMALAM  KAAAQARVAF  YVLDRPNPLD  GVTLEGNLVG  EKFRSFVGLY  ALPNRHGMTA180
GELARLFNAQ  EGFGCDLTVV  PCEGWTRDMY  WSDTGLPFLP  PSPNMPTADT  ALVYPGMCQL240
EGTNVSEGRG  TCRPFEQFGA  PWVDTDQLMA  RLDKERLPGV  AFRPVGFTPT  FDKYTGQSCS300
GAFIHVTDRK  AYQPLRTGIA  ITQALHDIGP  GHFAWRADAY  EFVEDVPAFD  LLCGTDQVRR360
GIEEGWSLDR  MLEGFEAQAE  AFRKRREPAL  LYASSR396

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help