CAZyme3D

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Entry ID

Information for CAZyme ID: AFC30594.1

Basic Information

GenBank IDAFC30594.1
FamilyCBM36, CBM6, GH43_16
Sequence Length631
UniProt IDH6NAW8(100,100)Download
Average pLDDT?93.62
CAZy50 ID1755
CAZy50 RepNo, ANY68648.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1116391
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus mucilaginosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIRKLTVLLW  VLTLLLSGLP  GLSVHAANSP  LAKIPGNSNP  LMDHKLGADP  FALVYKGRVY60
VYMSSDEYVY  NSDGTVKEND  FSPLNKIQVI  SSADMVNWTD  HGAIPVAGYN  NANNGSGIAK120
WASLSWAPSA  AYKTINGKDK  FFLYFANGAS  GIGVLTADSP  IGPWTDPLGK  ALVTQSTPGM180
SGVTWLFDPA  VLVDDDGTGY  LYSGGGIPNT  SDPASVANPK  TARVLKLGAD  MTSVAGSAVT240
IDAPYMFEDS  GIHKYNGKYY  YSYCINFSGT  HPPDYPAGEI  GYMVSSSPMG  PFTYKGHFLK300
NPYTFFGVGG  NNHHAVFNFN  NQWYVVYHAQ  TVSKAQLGEG  KGYRSPHINK  LVHNADGTIQ360
EVQGNMAGVP  QTANLNPYTR  VEAETIGWQA  GIATEKSQAA  GGPVANLNVT  NIHNGDWIAV420
GSADFGTGGA  KTVKANVAST  VGGKIEVRLD  SAAGPLVGTL  NVSPTGGAQV  WKEIETGVSG480
AAGVHKVFFV  FTGSGTGSLF  NMDYWQFTPN  TSGTKVEAET  MTLGGTYAGK  VNSPFSGVVL540
YANQDSAAYT  QYFANSTHSI  SVRGASSSSA  TARVDLLIGG  TAVGSFYFTG  TAPTVQTLSG600
ISHATGNQEV  KLVLTTDNGT  WDAYVDYIEF  Q631

Predicted 3D structure by AlphaFold2 with pLDDT = 93.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_16(38-359)+CBM6(381-508)+CBM36(517-630)

MIRKLTVLLW  VLTLLLSGLP  GLSVHAANSP  LAKIPGNSNP  LMDHKLGADP  FALVYKGRVY60
VYMSSDEYVY  NSDGTVKEND  FSPLNKIQVI  SSADMVNWTD  HGAIPVAGYN  NANNGSGIAK120
WASLSWAPSA  AYKTINGKDK  FFLYFANGAS  GIGVLTADSP  IGPWTDPLGK  ALVTQSTPGM180
SGVTWLFDPA  VLVDDDGTGY  LYSGGGIPNT  SDPASVANPK  TARVLKLGAD  MTSVAGSAVT240
IDAPYMFEDS  GIHKYNGKYY  YSYCINFSGT  HPPDYPAGEI  GYMVSSSPMG  PFTYKGHFLK300
NPYTFFGVGG  NNHHAVFNFN  NQWYVVYHAQ  TVSKAQLGEG  KGYRSPHINK  LVHNADGTIQ360
EVQGNMAGVP  QTANLNPYTR  VEAETIGWQA  GIATEKSQAA  GGPVANLNVT  NIHNGDWIAV420
GSADFGTGGA  KTVKANVAST  VGGKIEVRLD  SAAGPLVGTL  NVSPTGGAQV  WKEIETGVSG480
AAGVHKVFFV  FTGSGTGSLF  NMDYWQFTPN  TSGTKVEAET  MTLGGTYAGK  VNSPFSGVVL540
YANQDSAAYT  QYFANSTHSI  SVRGASSSSA  TARVDLLIGG  TAVGSFYFTG  TAPTVQTLSG600
ISHATGNQEV  KLVLTTDNGT  WDAYVDYIEF  Q631

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help