CAZyme3D

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Entry ID

Information for CAZyme ID: AFB71151.1

Basic Information

GenBank IDAFB71151.1
FamilyGT112
Sequence Length391
UniProt IDF8SKF2(100,100)Download
Average pLDDT?96.49
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID562
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTFLSPPEVP  TIKAENGTYY  DFNNGARILF  PKGEWHVNII  DEDSGNILFS  CDTQAGWVTS60
TKKYYVKFRI  QAFKKGEKKP  FLDTVMELKD  NPVLISFPTG  TLGDIIAWFH  YAEKFRIKHQ120
CKLECSVSEE  FITLLSDNYP  DIKFTSAQDK  YEGKPYATYR  IGLFFNGDTD  NQPVDFRLVG180
FHRNAGYILG  VSPQEDPPRL  NLSAERKIQE  PYVCIAVQST  AQAKHWNNGL  GWAEVVRYLK240
ELGYRVLCID  RNAHAGNGFV  WNHIPWGAED  FTGALPLQER  VDLLRHASFF  VGLASGLSWL300
AWACRIPVVL  ISGFSRPDSE  FYTPWRVFNS  HGCNGCWDNT  NYNFDHTDFL  WCPVHKGTDR360
QFECTRLITG  KQVCGVIRTL  HSYLTNHDRI  I391

Predicted 3D structure by AlphaFold2 with pLDDT = 96.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(9-378)

MTFLSPPEVP  TIKAENGTYY  DFNNGARILF  PKGEWHVNII  DEDSGNILFS  CDTQAGWVTS60
TKKYYVKFRI  QAFKKGEKKP  FLDTVMELKD  NPVLISFPTG  TLGDIIAWFH  YAEKFRIKHQ120
CKLECSVSEE  FITLLSDNYP  DIKFTSAQDK  YEGKPYATYR  IGLFFNGDTD  NQPVDFRLVG180
FHRNAGYILG  VSPQEDPPRL  NLSAERKIQE  PYVCIAVQST  AQAKHWNNGL  GWAEVVRYLK240
ELGYRVLCID  RNAHAGNGFV  WNHIPWGAED  FTGALPLQER  VDLLRHASFF  VGLASGLSWL300
AWACRIPVVL  ISGFSRPDSE  FYTPWRVFNS  HGCNGCWDNT  NYNFDHTDFL  WCPVHKGTDR360
QFECTRLITG  KQVCGVIRTL  HSYLTNHDRI  I391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help