CAZyme3D

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Entry ID

Information for CAZyme ID: AEX50878.1

Basic Information

GenBank IDAEX50878.1
FamilyCBM50, GH23
Sequence Length462
UniProt IDH2IYE2(100,100)Download
Average pLDDT?75.79
CAZy50 ID65563
CAZy50 RepNo, QBH95679.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID745277
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella aquatilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKANAILIIA  SMLLTGCQAS  RQGVKVPEQH  AQSLSSASQS  EEAGQFTGDG  RAASGGWLDG60
NDTVSQQNLW  NFIGDELKMK  VPDNPRIREQ  RVKYLKNKSY  LHDVTLRAEP  YMYWITEQIK120
KRNMPMELVL  LPIVESAFDP  KATSSANAAG  LWQIVPQTGR  NYGLKQNQWY  DGRRDVVAST180
TAALDMMQRL  NKMFGGDWLL  TVAAYNSGEG  RVMQAVKANK  ARGRSTDFWA  LALPRETSIY240
VPKMLALSDI  LKHSKKYGIS  LPKPSEDRAL  ARVEVGQQMQ  LTQAAEMAGM  SLTKLKSFNT300
GYKKNVTAPN  GPHYIVLPKA  HADQLKDSLA  DGDIAAVQET  KLASNTPSGA  KEYKVRSGDS360
LSGIAARLNV  KTRDLQRWNN  LRSAGALKVG  QTLQVADNSV  SSTSVNGGSI  TYQVRKGDSL420
SSIARRHGVN  IKDVMRWNTN  ADNLQPGNKL  TLFVSNKMSP  DT462

Predicted 3D structure by AlphaFold2 with pLDDT = 75.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(111-254)+CBM50(353-395)+CBM50(412-452)

MKANAILIIA  SMLLTGCQAS  RQGVKVPEQH  AQSLSSASQS  EEAGQFTGDG  RAASGGWLDG60
NDTVSQQNLW  NFIGDELKMK  VPDNPRIREQ  RVKYLKNKSY  LHDVTLRAEP  YMYWITEQIK120
KRNMPMELVL  LPIVESAFDP  KATSSANAAG  LWQIVPQTGR  NYGLKQNQWY  DGRRDVVAST180
TAALDMMQRL  NKMFGGDWLL  TVAAYNSGEG  RVMQAVKANK  ARGRSTDFWA  LALPRETSIY240
VPKMLALSDI  LKHSKKYGIS  LPKPSEDRAL  ARVEVGQQMQ  LTQAAEMAGM  SLTKLKSFNT300
GYKKNVTAPN  GPHYIVLPKA  HADQLKDSLA  DGDIAAVQET  KLASNTPSGA  KEYKVRSGDS360
LSGIAARLNV  KTRDLQRWNN  LRSAGALKVG  QTLQVADNSV  SSTSVNGGSI  TYQVRKGDSL420
SSIARRHGVN  IKDVMRWNTN  ADNLQPGNKL  TLFVSNKMSP  DT462

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help