CAZyme3D

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Entry ID

Information for CAZyme ID: AEX04221.1

Basic Information

GenBank IDAEX04221.1
FamilyCBM34, GH13_21
Sequence Length606
UniProt IDA0A0H3H497(100,100)Download
Average pLDDT?93.86
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1006551
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella michiganensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMLKAWHLPV  APFIKEQQER  LIITLWLSGD  DLPPRVTLRA  EEDNEELSLP  MHRLRQEPHP60
GVVAWRGEIS  LVNGQPRRRY  SFKLLWADRQ  LWFTPQGFNR  FPPARLEQFA  VDLPDSGPQW120
VADQVFYQIF  PDRFARSESR  EAGQDAIYYH  HAAGHDIVRK  AWDEPLTAEA  GGSTFYGGDL180
DGISERLPYL  KQLGVTALYL  NPVFVAPSVH  KYDTEDYRRV  DPQFGGDAAL  LRLRHHTQKE240
GMRLILDGVF  NHSGDSHAWF  DRHQRGSGGA  CHNADSPWRD  WYNFSPEGVA  HDWLGYASLP300
KLDYRSSTLI  DEIYGGEDSI  VRHWLKAPWS  MDGWRLDVVH  MLGEEGGARN  NLRHIAGITQ360
AAKLERPDAF  VFGEHFGDAR  QWLQADVEDS  AMNYRGFTFP  LWGFLANTDI  SYDPQKIDAQ420
TCMAWMDNYR  AGLSHQQQLR  MFNQLDSHDT  ARFKSLLGKD  VARLPLAVVW  LFSWPGVPCI480
YYGDEVGVDG  NNDPFCRKPF  PWDPALQDGA  LLELYKRMSK  LRKANQALRY  GGCQVIYAED540
NVVVFVRVYK  QQRVLVAINR  GEACEVVVED  SPLLDVNGWQ  LKEGAGALHD  GVLTLPAISA600
SVWFSR606

Predicted 3D structure by AlphaFold2 with pLDDT = 93.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(6-112)+GH13_21(178-492)

MMLKAWHLPV  APFIKEQQER  LIITLWLSGD  DLPPRVTLRA  EEDNEELSLP  MHRLRQEPHP60
GVVAWRGEIS  LVNGQPRRRY  SFKLLWADRQ  LWFTPQGFNR  FPPARLEQFA  VDLPDSGPQW120
VADQVFYQIF  PDRFARSESR  EAGQDAIYYH  HAAGHDIVRK  AWDEPLTAEA  GGSTFYGGDL180
DGISERLPYL  KQLGVTALYL  NPVFVAPSVH  KYDTEDYRRV  DPQFGGDAAL  LRLRHHTQKE240
GMRLILDGVF  NHSGDSHAWF  DRHQRGSGGA  CHNADSPWRD  WYNFSPEGVA  HDWLGYASLP300
KLDYRSSTLI  DEIYGGEDSI  VRHWLKAPWS  MDGWRLDVVH  MLGEEGGARN  NLRHIAGITQ360
AAKLERPDAF  VFGEHFGDAR  QWLQADVEDS  AMNYRGFTFP  LWGFLANTDI  SYDPQKIDAQ420
TCMAWMDNYR  AGLSHQQQLR  MFNQLDSHDT  ARFKSLLGKD  VARLPLAVVW  LFSWPGVPCI480
YYGDEVGVDG  NNDPFCRKPF  PWDPALQDGA  LLELYKRMSK  LRKANQALRY  GGCQVIYAED540
NVVVFVRVYK  QQRVLVAINR  GEACEVVVED  SPLLDVNGWQ  LKEGAGALHD  GVLTLPAISA600
SVWFSR606

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help