CAZyme3D

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Entry ID

Information for CAZyme ID: AEW85547.1

Basic Information

GenBank IDAEW85547.1
FamilyGH171
Sequence Length416
UniProt IDG8X5U4(100,100)Download
Average pLDDT?87.37
CAZy50 ID73305
CAZy50 RepNo, UAB80133.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1041826
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium columnare

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIYNLVFKNT  FLLLLFTIIT  YGNYKKSIQL  SDDSIWMVNS  KYQKKESFLL  KEGGVLTGAD60
NSSIYLPLLK  DKRVGIVTNQ  TGILHDGTHL  VDFLIDHKIS  IQKIYAPEHG  FRGTADAGEL120
IKDGKDYKTG  LPIISLYGNN  KKPKSEQLDG  IEVMVFDLQD  VGVRFYTYIS  SLHYVMEACA180
ENNIPLLVLD  RPNPNGNIID  GPVLETEFKN  FVGMHPVPVL  YGMTIGEYAN  MINGEKWLKN240
GIECKLKIIS  CKNYKRGMFY  DLPVNPSPNL  PNHQAINLYA  SLCFFEGTNV  SVGRGTEKQF300
QIYGSPYLTE  NDFTFTPLPN  LGAKDPLWNG  KVCYGEDLSR  IEKVKQLELK  WVIKAYKENS360
QTMNPFFNSF  FTKLAGTKKL  QQQIERGVSE  KEIRKSWKKD  LLKFKHIRLK  YLNMEY416

Predicted 3D structure by AlphaFold2 with pLDDT = 87.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(74-412)

MIYNLVFKNT  FLLLLFTIIT  YGNYKKSIQL  SDDSIWMVNS  KYQKKESFLL  KEGGVLTGAD60
NSSIYLPLLK  DKRVGIVTNQ  TGILHDGTHL  VDFLIDHKIS  IQKIYAPEHG  FRGTADAGEL120
IKDGKDYKTG  LPIISLYGNN  KKPKSEQLDG  IEVMVFDLQD  VGVRFYTYIS  SLHYVMEACA180
ENNIPLLVLD  RPNPNGNIID  GPVLETEFKN  FVGMHPVPVL  YGMTIGEYAN  MINGEKWLKN240
GIECKLKIIS  CKNYKRGMFY  DLPVNPSPNL  PNHQAINLYA  SLCFFEGTNV  SVGRGTEKQF300
QIYGSPYLTE  NDFTFTPLPN  LGAKDPLWNG  KVCYGEDLSR  IEKVKQLELK  WVIKAYKENS360
QTMNPFFNSF  FTKLAGTKKL  QQQIERGVSE  KEIRKSWKKD  LLKFKHIRLK  YLNMEY416

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help