CAZyme3D

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Entry ID

Information for CAZyme ID: AEO36080.1

Basic Information

GenBank IDAEO36080.1
FamilyCBM48, GH13_8
Sequence Length685
UniProt IDG3MRG2(100,100)Download
Average pLDDT?96.67
CAZy50 ID1179
CAZy50 RepNo, CAD7274711.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID34609
KingdomEukaryota
PhylumArthropoda
ClassArachnida
OrderIxodida
FamilyIxodidae
GenusAmblyomma
SpeciesAmblyomma maculatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MASYMDVPVP  YIEELLKHDP  YLKNHENEIR  RRYKCFKEQL  LRIENSEGLL  EFCKSYEKYG60
IHCMPDNSIH  ILEWAPGAEA  VFLRGDFNSW  ERLTHPFKKL  PFGKWELTLP  PKPDGSPQIG120
HLDRVKIVIL  NKTTGELADR  NSPWATYVAR  DKTNPQYDHR  FWNPPEAERY  KFKHPKVPVP180
KSLRIYECHI  GIASEDYWVA  NYANFMNNVL  PRIKHQGYNA  IQIMAIMEHA  YYASFGYQVT240
SFFAASSRYG  TPEELKALVD  RAHEMGIYVL  LDVVHSHASK  NVLDGLNQFD  GTNSCFFHDG300
GRGTHPLWDS  RLFDYTQMET  LRFLLSNCHW  YLKEYQFDGF  RFDGVTSMLY  HSHGMGHGFS360
GDYNEYFGLN  TDTESLVYIM  LANHMIHTLH  PNAITIAEDV  SGMPALCRPV  DEGGGGFDFR420
LGMALPDLWI  KLLKEQKDED  WNMGNIVHTM  CNRRWMEKTV  AYAESHDQAL  VGDKTLAFWL480
MDKEMYTNMS  VLTELTPIVD  RGLAMHKIIR  MITHALGGEA  WLNFIGNEFG  HPEWLDFPRI540
GNNESYHHAR  RQWHLVEDNL  LRYKFLNNFD  RALNTTEEKY  HWLPAAPGYV  SWKHEDDKVI600
AFERAGLLFV  INFHPFKSFS  DYQVGIDMPG  KYKVVLDSDA  EEFGGHKRID  RGVDALTFNE660
PYAGRRNSIK  VYVPSRVGLI  YARAD685

Predicted 3D structure by AlphaFold2 with pLDDT = 96.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(58-114)+GH13_8(234-527)

MASYMDVPVP  YIEELLKHDP  YLKNHENEIR  RRYKCFKEQL  LRIENSEGLL  EFCKSYEKYG60
IHCMPDNSIH  ILEWAPGAEA  VFLRGDFNSW  ERLTHPFKKL  PFGKWELTLP  PKPDGSPQIG120
HLDRVKIVIL  NKTTGELADR  NSPWATYVAR  DKTNPQYDHR  FWNPPEAERY  KFKHPKVPVP180
KSLRIYECHI  GIASEDYWVA  NYANFMNNVL  PRIKHQGYNA  IQIMAIMEHA  YYASFGYQVT240
SFFAASSRYG  TPEELKALVD  RAHEMGIYVL  LDVVHSHASK  NVLDGLNQFD  GTNSCFFHDG300
GRGTHPLWDS  RLFDYTQMET  LRFLLSNCHW  YLKEYQFDGF  RFDGVTSMLY  HSHGMGHGFS360
GDYNEYFGLN  TDTESLVYIM  LANHMIHTLH  PNAITIAEDV  SGMPALCRPV  DEGGGGFDFR420
LGMALPDLWI  KLLKEQKDED  WNMGNIVHTM  CNRRWMEKTV  AYAESHDQAL  VGDKTLAFWL480
MDKEMYTNMS  VLTELTPIVD  RGLAMHKIIR  MITHALGGEA  WLNFIGNEFG  HPEWLDFPRI540
GNNESYHHAR  RQWHLVEDNL  LRYKFLNNFD  RALNTTEEKY  HWLPAAPGYV  SWKHEDDKVI600
AFERAGLLFV  INFHPFKSFS  DYQVGIDMPG  KYKVVLDSDA  EEFGGHKRID  RGVDALTFNE660
PYAGRRNSIK  VYVPSRVGLI  YARAD685

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help