CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AEK80398.1

Basic Information

GenBank IDAEK80398.1
FamilyGH8
Sequence Length406
UniProt IDG0Z8G7(100,100)Download
Average pLDDT?90.56
CAZy50 ID83821
CAZy50 RepNo, AAL71844.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1078773
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum rubrisubalbicans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSRARRKCL  TALATGAAVA  GLPALLPSAA  NAAQSKCIAV  DWPAWQSWAG  AHVQPDGRVL60
HSSLQPNHTT  SEGQSYNMLL  ALIANDPERF  DQVWSWTRDN  MMGSDPANRL  PAWLWGQGAD120
GKWQVQDANS  ASDADLWIAY  ALLEAARLWQ  RPQYRSDAQG  LLDSIETKLV  VNLPGLGKMV180
LPGPLGFNQR  DQAWTLNPSY  LPLPLLRRLH  KERPKGPWQQ  IAQNTVRMIQ  ATSPKGFVAD240
WVGYKMTAPQ  AGQFMVDPAK  GELGSYDAIR  VYLWAGLTSP  RDPLAAPLLA  ALDGMRQTIL300
ATGVPPEKVK  VTTGVVEGQA  PFGFTAALVP  FLMAKGESAL  AAQWQRRAAQ  SLESGLAQPS360
AQPEVLYYNV  MLGLFGLGWA  EKRYQFREDG  TLNLSWEKSC  ARAVTR406

Predicted 3D structure by AlphaFold2 with pLDDT = 90.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(42-379)

MFSRARRKCL  TALATGAAVA  GLPALLPSAA  NAAQSKCIAV  DWPAWQSWAG  AHVQPDGRVL60
HSSLQPNHTT  SEGQSYNMLL  ALIANDPERF  DQVWSWTRDN  MMGSDPANRL  PAWLWGQGAD120
GKWQVQDANS  ASDADLWIAY  ALLEAARLWQ  RPQYRSDAQG  LLDSIETKLV  VNLPGLGKMV180
LPGPLGFNQR  DQAWTLNPSY  LPLPLLRRLH  KERPKGPWQQ  IAQNTVRMIQ  ATSPKGFVAD240
WVGYKMTAPQ  AGQFMVDPAK  GELGSYDAIR  VYLWAGLTSP  RDPLAAPLLA  ALDGMRQTIL300
ATGVPPEKVK  VTTGVVEGQA  PFGFTAALVP  FLMAKGESAL  AAQWQRRAAQ  SLESGLAQPS360
AQPEVLYYNV  MLGLFGLGWA  EKRYQFREDG  TLNLSWEKSC  ARAVTR406

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help