Information for CAZyme ID: AEJ18475.1
Basic Information
GenBank ID | AEJ18475.1 |
Family | GH52 |
Sequence Length | 698 |
UniProt ID | F8EZW2(100,100)![]() |
Average pLDDT? | 94.89 |
CAZy50 ID | 37312 |
CAZy50 Rep | No, AEC01950.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 744872 |
Kingdom | Bacteria |
Phylum | Spirochaetota |
Class | Spirochaetia |
Order | Spirochaetales |
Family | Breznakiellaceae |
Genus | Gracilinema |
Species | Gracilinema caldarium |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MGLRVSENDF YSLHGMWGAY ASLILGRIGK GAGLVIGNVQ PPQRGLFIGY RLGAETPWIL | 60 |
PFCPETKIGL DASAYVDPDA PAKPMLSPAD FSYFPQETIE RSLSLSGEEW KAGLLSFKVT | 120 |
SFFGSVADPV SADPSLLRQQ LRPALYITLT FDNSKKSEPL IGVFGMQGVR RPLSDSTNGT | 180 |
LLGFAHGTEW GFACLPDESI EEVMDWRAID AAFNGNRPIR RLASEGVLRI KVNPGETKMV | 240 |
HIALGVYRDG IITSGLRTQT YYSSLFQDLE EVLDSALRDT AFMLATAAEL DKGLEQSSLS | 300 |
DDKKFLLSHA VHSYCANTEL LISEKGDPVF IVNEGEYQMM NTLDLTVDQA FFELVYSPWT | 360 |
VKNELDFFLT RSSYKDAYGI AFCHDQGVAD SFTPVGTSVY ELPHLSECFS YMSFEETLNW | 420 |
VLTACLYISK TGDIQWFSEN RHHLEACLAS MKTRDKNQDG IMDIDSDRCA GGSEITTYDS | 480 |
LDVSLGQARN NLYLAVKSWA AYVCIEALFR QYASDSVHII ESARISAQWA ASTIQSRMLP | 540 |
EGYIPAVFES DNRSKIIPAI EGLVYPYICG WPELVSEQGP FGSFVKTLQK HLQTVLQAGS | 600 |
CLDSVSGGWK LSSTSHNTWL SKIFVNQFVA ENILGFTDPE LYRDAVHAKW LRNGSAQWAA | 660 |
TDQVHSSDGH DMGSRLYPRL VTSILWYSYM GTSKNCSF | 698 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.89 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH52(24-427)
MGLRVSENDF YSLHGMWGAY ASLILGRIGK GAGLVIGNVQ PPQRGLFIGY RLGAETPWIL | 60 |
PFCPETKIGL DASAYVDPDA PAKPMLSPAD FSYFPQETIE RSLSLSGEEW KAGLLSFKVT | 120 |
SFFGSVADPV SADPSLLRQQ LRPALYITLT FDNSKKSEPL IGVFGMQGVR RPLSDSTNGT | 180 |
LLGFAHGTEW GFACLPDESI EEVMDWRAID AAFNGNRPIR RLASEGVLRI KVNPGETKMV | 240 |
HIALGVYRDG IITSGLRTQT YYSSLFQDLE EVLDSALRDT AFMLATAAEL DKGLEQSSLS | 300 |
DDKKFLLSHA VHSYCANTEL LISEKGDPVF IVNEGEYQMM NTLDLTVDQA FFELVYSPWT | 360 |
VKNELDFFLT RSSYKDAYGI AFCHDQGVAD SFTPVGTSVY ELPHLSECFS YMSFEETLNW | 420 |
VLTACLYISK TGDIQWFSEN RHHLEACLAS MKTRDKNQDG IMDIDSDRCA GGSEITTYDS | 480 |
LDVSLGQARN NLYLAVKSWA AYVCIEALFR QYASDSVHII ESARISAQWA ASTIQSRMLP | 540 |
EGYIPAVFES DNRSKIIPAI EGLVYPYICG WPELVSEQGP FGSFVKTLQK HLQTVLQAGS | 600 |
CLDSVSGGWK LSSTSHNTWL SKIFVNQFVA ENILGFTDPE LYRDAVHAKW LRNGSAQWAA | 660 |
TDQVHSSDGH DMGSRLYPRL VTSILWYSYM GTSKNCSF | 698 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.