CAZyme3D

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Entry ID

Information for CAZyme ID: AEJ18475.1

Basic Information

GenBank IDAEJ18475.1
FamilyGH52
Sequence Length698
UniProt IDF8EZW2(100,100)Download
Average pLDDT?94.89
CAZy50 ID37312
CAZy50 RepNo, AEC01950.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID744872
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyBreznakiellaceae
GenusGracilinema
SpeciesGracilinema caldarium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGLRVSENDF  YSLHGMWGAY  ASLILGRIGK  GAGLVIGNVQ  PPQRGLFIGY  RLGAETPWIL60
PFCPETKIGL  DASAYVDPDA  PAKPMLSPAD  FSYFPQETIE  RSLSLSGEEW  KAGLLSFKVT120
SFFGSVADPV  SADPSLLRQQ  LRPALYITLT  FDNSKKSEPL  IGVFGMQGVR  RPLSDSTNGT180
LLGFAHGTEW  GFACLPDESI  EEVMDWRAID  AAFNGNRPIR  RLASEGVLRI  KVNPGETKMV240
HIALGVYRDG  IITSGLRTQT  YYSSLFQDLE  EVLDSALRDT  AFMLATAAEL  DKGLEQSSLS300
DDKKFLLSHA  VHSYCANTEL  LISEKGDPVF  IVNEGEYQMM  NTLDLTVDQA  FFELVYSPWT360
VKNELDFFLT  RSSYKDAYGI  AFCHDQGVAD  SFTPVGTSVY  ELPHLSECFS  YMSFEETLNW420
VLTACLYISK  TGDIQWFSEN  RHHLEACLAS  MKTRDKNQDG  IMDIDSDRCA  GGSEITTYDS480
LDVSLGQARN  NLYLAVKSWA  AYVCIEALFR  QYASDSVHII  ESARISAQWA  ASTIQSRMLP540
EGYIPAVFES  DNRSKIIPAI  EGLVYPYICG  WPELVSEQGP  FGSFVKTLQK  HLQTVLQAGS600
CLDSVSGGWK  LSSTSHNTWL  SKIFVNQFVA  ENILGFTDPE  LYRDAVHAKW  LRNGSAQWAA660
TDQVHSSDGH  DMGSRLYPRL  VTSILWYSYM  GTSKNCSF698

Predicted 3D structure by AlphaFold2 with pLDDT = 94.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH52(24-427)

MGLRVSENDF  YSLHGMWGAY  ASLILGRIGK  GAGLVIGNVQ  PPQRGLFIGY  RLGAETPWIL60
PFCPETKIGL  DASAYVDPDA  PAKPMLSPAD  FSYFPQETIE  RSLSLSGEEW  KAGLLSFKVT120
SFFGSVADPV  SADPSLLRQQ  LRPALYITLT  FDNSKKSEPL  IGVFGMQGVR  RPLSDSTNGT180
LLGFAHGTEW  GFACLPDESI  EEVMDWRAID  AAFNGNRPIR  RLASEGVLRI  KVNPGETKMV240
HIALGVYRDG  IITSGLRTQT  YYSSLFQDLE  EVLDSALRDT  AFMLATAAEL  DKGLEQSSLS300
DDKKFLLSHA  VHSYCANTEL  LISEKGDPVF  IVNEGEYQMM  NTLDLTVDQA  FFELVYSPWT360
VKNELDFFLT  RSSYKDAYGI  AFCHDQGVAD  SFTPVGTSVY  ELPHLSECFS  YMSFEETLNW420
VLTACLYISK  TGDIQWFSEN  RHHLEACLAS  MKTRDKNQDG  IMDIDSDRCA  GGSEITTYDS480
LDVSLGQARN  NLYLAVKSWA  AYVCIEALFR  QYASDSVHII  ESARISAQWA  ASTIQSRMLP540
EGYIPAVFES  DNRSKIIPAI  EGLVYPYICG  WPELVSEQGP  FGSFVKTLQK  HLQTVLQAGS600
CLDSVSGGWK  LSSTSHNTWL  SKIFVNQFVA  ENILGFTDPE  LYRDAVHAKW  LRNGSAQWAA660
TDQVHSSDGH  DMGSRLYPRL  VTSILWYSYM  GTSKNCSF698

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help