CAZyme3D

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Entry ID

Information for CAZyme ID: AEI68821.1

Basic Information

GenBank IDAEI68821.1
FamilyCBM20, GH13
Sequence Length782
UniProt IDF8CJ39(100,100)Download
Average pLDDT?84.07
CAZy50 ID24571
CAZy50 RepNo, AKF82971.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID35
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyMyxococcaceae
GenusCorallococcus
SpeciesCorallococcus macrosporus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVSLTAALA  AVTLAACLPR  AAPPPLAPSG  TVVAVAYVRD  DARRPGVVAD  VPEGLKQRIA60
EALSKRNLRA  EVVPYADYAA  YYAKVRDSQR  RFEMMKALTP  EAPLHLLVET  RVSFFSQVGG120
RFSWDISVRT  TAARADSPMA  PTVVNQDYGA  ALQFDQQRED  DAQLEVAQQI  AGQVGSLFDS180
FLASPFLVPD  TDGGSGTVPG  LNAPAGPGIE  PGKSTPPTTP  APYRGSWEPP  PGDAVYFVMV240
DRFSNGDTKN  DGAVDLKDAQ  AFHGGDLQGV  IDRLDGLRQL  GVRTVWLSPV  FQMRTDTFYG300
YGAFHGYWVE  DFGKVEPRFG  DEALLKTLAA  ELRRRDMRLV  LDVVLNHVGP  ETRLSRERPD360
WFHGRGPIKD  WDDPSELVMG  DVHGLPDLAV  EKEEVYAHLL  AHSRRWVDVL  KPAGFRLDAV420
KHMPTSFWAR  YNDDLRQHAG  KDFLLLGEML  DGDPVLLSTT  MKEGRFGTMF  DFPLAFALVD480
VFCRERAPSH  LGAILFNDRL  YPAPGSLVTM  VDNHDLPRVM  SECAGDVERV  KRALAVQLTA540
RGVPALTYGT  EEGLTGAKEP  ENRGDMRFTD  HPLRAWIGGL  LALRRGSEAL  QRGETMVLAA600
REDLFAYARV  TADEAVVIAV  NAGDSAEDVP  LPDVLAGARL  EPVALAPPLA  AADVGTVRVP660
AGDVALARLT  PPEAGGFVTA  AKLAGLRWRG  RGTRRAVQLV  VDDPSVRLVG  SGPELGGWKP720
EHSLRPGPDG  FALSLPVGAV  FEYKLLRAGS  QGKYDWEDGD  NRLLFVDEGS  GPLRQTLAWS780
RR782

Predicted 3D structure by AlphaFold2 with pLDDT = 84.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_2(264-552)+CBM20(704-768)

MVVSLTAALA  AVTLAACLPR  AAPPPLAPSG  TVVAVAYVRD  DARRPGVVAD  VPEGLKQRIA60
EALSKRNLRA  EVVPYADYAA  YYAKVRDSQR  RFEMMKALTP  EAPLHLLVET  RVSFFSQVGG120
RFSWDISVRT  TAARADSPMA  PTVVNQDYGA  ALQFDQQRED  DAQLEVAQQI  AGQVGSLFDS180
FLASPFLVPD  TDGGSGTVPG  LNAPAGPGIE  PGKSTPPTTP  APYRGSWEPP  PGDAVYFVMV240
DRFSNGDTKN  DGAVDLKDAQ  AFHGGDLQGV  IDRLDGLRQL  GVRTVWLSPV  FQMRTDTFYG300
YGAFHGYWVE  DFGKVEPRFG  DEALLKTLAA  ELRRRDMRLV  LDVVLNHVGP  ETRLSRERPD360
WFHGRGPIKD  WDDPSELVMG  DVHGLPDLAV  EKEEVYAHLL  AHSRRWVDVL  KPAGFRLDAV420
KHMPTSFWAR  YNDDLRQHAG  KDFLLLGEML  DGDPVLLSTT  MKEGRFGTMF  DFPLAFALVD480
VFCRERAPSH  LGAILFNDRL  YPAPGSLVTM  VDNHDLPRVM  SECAGDVERV  KRALAVQLTA540
RGVPALTYGT  EEGLTGAKEP  ENRGDMRFTD  HPLRAWIGGL  LALRRGSEAL  QRGETMVLAA600
REDLFAYARV  TADEAVVIAV  NAGDSAEDVP  LPDVLAGARL  EPVALAPPLA  AADVGTVRVP660
AGDVALARLT  PPEAGGFVTA  AKLAGLRWRG  RGTRRAVQLV  VDDPSVRLVG  SGPELGGWKP720
EHSLRPGPDG  FALSLPVGAV  FEYKLLRAGS  QGKYDWEDGD  NRLLFVDEGS  GPLRQTLAWS780
RR782

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help