Information for CAZyme ID: AEG91752.1
Basic Information
GenBank ID | AEG91752.1 |
Family | GH5 |
Sequence Length | 824 |
UniProt ID | F5XWZ1(100,100)![]() |
Average pLDDT? | 89.26 |
CAZy50 ID | 24487 |
CAZy50 Rep | No, ABE45326.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 365046 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Burkholderiales |
Family | Comamonadaceae |
Genus | Ramlibacter |
Species | Ramlibacter tataouinensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MQRRTFHKGA VTTAVLGLFA LVGCGGGGGG SSTSAGAAPG PGTGPVASPT PGTPAPPPLP | 60 |
ANLATMGTNF AGMEWAAGRL RVSPEILPNE HFSVPRAADV TYMATQGFGR NRLPIQWELL | 120 |
QPMLSDTPAN AQARALIGEP GAFNAAYAGY ITAVFDAHAA VGARCILDLH NYCRYRDFRF | 180 |
QPDGSVIGLA AGGPPLGHAY TTDPSQVWTR ICATAPGASI TTAALADFWS RAAALWKDHP | 240 |
GFGGYGLMNE PHDMPRPGET VESTSGEDLM IWPAFARAAI AAIRAVDPSG PIYVSGNAWG | 300 |
GAMSIGPQFN PAWPLAGDNL VYEVHAYLDA WNSGTGFDWD VELREKDYVA GVGPGRMTLD | 360 |
TGVDRMRIAT DWARANGQRI ALTEAGMPID DPRWEEAFRR MVEHTRDNGV EMQSWMGGSH | 420 |
WQVRNFPIHH TPGWHQNRTL EPQVAGPMKA ADGIALAAVF DDGPGSPQGG GAVTITVYVR | 480 |
GHLERPLTLT VASDNGGAFS KTTLVIPAGA NGQDSYSFTP GPDRVTTLSY ASDGSLGGQV | 540 |
PPPRKVYSLA DPVAHAAVDL ATAAMALIAR YGAGKWDMAD GHTDFVQGWP AGEGEAVRAV | 600 |
ADSGFASSPG NAMEMLNWFN QDGPNMGALQ PPVMRGTAGR RHTDHTAPGS TGLWCKKAVP | 660 |
EPSKPNPRNR APYDLQDPHF VVAAVRLPGA NSGVVFQASM AENAWYSELA VRNGQPQARW | 720 |
RDRNGQVVEL TAAAALAPEA PAVLSLVAAP GSQQLRVNGS PAGSAGASLA SCPFGQMLIG | 780 |
FGFLQGRAVP GFGGHVYGVI AGRGSPSAAE LAVLEQYAAS LGGA | 824 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.26 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH5_5(66-422)
MQRRTFHKGA VTTAVLGLFA LVGCGGGGGG SSTSAGAAPG PGTGPVASPT PGTPAPPPLP | 60 |
ANLATMGTNF AGMEWAAGRL RVSPEILPNE HFSVPRAADV TYMATQGFGR NRLPIQWELL | 120 |
QPMLSDTPAN AQARALIGEP GAFNAAYAGY ITAVFDAHAA VGARCILDLH NYCRYRDFRF | 180 |
QPDGSVIGLA AGGPPLGHAY TTDPSQVWTR ICATAPGASI TTAALADFWS RAAALWKDHP | 240 |
GFGGYGLMNE PHDMPRPGET VESTSGEDLM IWPAFARAAI AAIRAVDPSG PIYVSGNAWG | 300 |
GAMSIGPQFN PAWPLAGDNL VYEVHAYLDA WNSGTGFDWD VELREKDYVA GVGPGRMTLD | 360 |
TGVDRMRIAT DWARANGQRI ALTEAGMPID DPRWEEAFRR MVEHTRDNGV EMQSWMGGSH | 420 |
WQVRNFPIHH TPGWHQNRTL EPQVAGPMKA ADGIALAAVF DDGPGSPQGG GAVTITVYVR | 480 |
GHLERPLTLT VASDNGGAFS KTTLVIPAGA NGQDSYSFTP GPDRVTTLSY ASDGSLGGQV | 540 |
PPPRKVYSLA DPVAHAAVDL ATAAMALIAR YGAGKWDMAD GHTDFVQGWP AGEGEAVRAV | 600 |
ADSGFASSPG NAMEMLNWFN QDGPNMGALQ PPVMRGTAGR RHTDHTAPGS TGLWCKKAVP | 660 |
EPSKPNPRNR APYDLQDPHF VVAAVRLPGA NSGVVFQASM AENAWYSELA VRNGQPQARW | 720 |
RDRNGQVVEL TAAAALAPEA PAVLSLVAAP GSQQLRVNGS PAGSAGASLA SCPFGQMLIG | 780 |
FGFLQGRAVP GFGGHVYGVI AGRGSPSAAE LAVLEQYAAS LGGA | 824 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.