CAZyme3D

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Entry ID

Information for CAZyme ID: AEG91752.1

Basic Information

GenBank IDAEG91752.1
FamilyGH5
Sequence Length824
UniProt IDF5XWZ1(100,100)Download
Average pLDDT?89.26
CAZy50 ID24487
CAZy50 RepNo, ABE45326.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID365046
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRamlibacter
SpeciesRamlibacter tataouinensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRRTFHKGA  VTTAVLGLFA  LVGCGGGGGG  SSTSAGAAPG  PGTGPVASPT  PGTPAPPPLP60
ANLATMGTNF  AGMEWAAGRL  RVSPEILPNE  HFSVPRAADV  TYMATQGFGR  NRLPIQWELL120
QPMLSDTPAN  AQARALIGEP  GAFNAAYAGY  ITAVFDAHAA  VGARCILDLH  NYCRYRDFRF180
QPDGSVIGLA  AGGPPLGHAY  TTDPSQVWTR  ICATAPGASI  TTAALADFWS  RAAALWKDHP240
GFGGYGLMNE  PHDMPRPGET  VESTSGEDLM  IWPAFARAAI  AAIRAVDPSG  PIYVSGNAWG300
GAMSIGPQFN  PAWPLAGDNL  VYEVHAYLDA  WNSGTGFDWD  VELREKDYVA  GVGPGRMTLD360
TGVDRMRIAT  DWARANGQRI  ALTEAGMPID  DPRWEEAFRR  MVEHTRDNGV  EMQSWMGGSH420
WQVRNFPIHH  TPGWHQNRTL  EPQVAGPMKA  ADGIALAAVF  DDGPGSPQGG  GAVTITVYVR480
GHLERPLTLT  VASDNGGAFS  KTTLVIPAGA  NGQDSYSFTP  GPDRVTTLSY  ASDGSLGGQV540
PPPRKVYSLA  DPVAHAAVDL  ATAAMALIAR  YGAGKWDMAD  GHTDFVQGWP  AGEGEAVRAV600
ADSGFASSPG  NAMEMLNWFN  QDGPNMGALQ  PPVMRGTAGR  RHTDHTAPGS  TGLWCKKAVP660
EPSKPNPRNR  APYDLQDPHF  VVAAVRLPGA  NSGVVFQASM  AENAWYSELA  VRNGQPQARW720
RDRNGQVVEL  TAAAALAPEA  PAVLSLVAAP  GSQQLRVNGS  PAGSAGASLA  SCPFGQMLIG780
FGFLQGRAVP  GFGGHVYGVI  AGRGSPSAAE  LAVLEQYAAS  LGGA824

Predicted 3D structure by AlphaFold2 with pLDDT = 89.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(66-422)

MQRRTFHKGA  VTTAVLGLFA  LVGCGGGGGG  SSTSAGAAPG  PGTGPVASPT  PGTPAPPPLP60
ANLATMGTNF  AGMEWAAGRL  RVSPEILPNE  HFSVPRAADV  TYMATQGFGR  NRLPIQWELL120
QPMLSDTPAN  AQARALIGEP  GAFNAAYAGY  ITAVFDAHAA  VGARCILDLH  NYCRYRDFRF180
QPDGSVIGLA  AGGPPLGHAY  TTDPSQVWTR  ICATAPGASI  TTAALADFWS  RAAALWKDHP240
GFGGYGLMNE  PHDMPRPGET  VESTSGEDLM  IWPAFARAAI  AAIRAVDPSG  PIYVSGNAWG300
GAMSIGPQFN  PAWPLAGDNL  VYEVHAYLDA  WNSGTGFDWD  VELREKDYVA  GVGPGRMTLD360
TGVDRMRIAT  DWARANGQRI  ALTEAGMPID  DPRWEEAFRR  MVEHTRDNGV  EMQSWMGGSH420
WQVRNFPIHH  TPGWHQNRTL  EPQVAGPMKA  ADGIALAAVF  DDGPGSPQGG  GAVTITVYVR480
GHLERPLTLT  VASDNGGAFS  KTTLVIPAGA  NGQDSYSFTP  GPDRVTTLSY  ASDGSLGGQV540
PPPRKVYSLA  DPVAHAAVDL  ATAAMALIAR  YGAGKWDMAD  GHTDFVQGWP  AGEGEAVRAV600
ADSGFASSPG  NAMEMLNWFN  QDGPNMGALQ  PPVMRGTAGR  RHTDHTAPGS  TGLWCKKAVP660
EPSKPNPRNR  APYDLQDPHF  VVAAVRLPGA  NSGVVFQASM  AENAWYSELA  VRNGQPQARW720
RDRNGQVVEL  TAAAALAPEA  PAVLSLVAAP  GSQQLRVNGS  PAGSAGASLA  SCPFGQMLIG780
FGFLQGRAVP  GFGGHVYGVI  AGRGSPSAAE  LAVLEQYAAS  LGGA824

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help