CAZyme3D

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Entry ID

Information for CAZyme ID: AEG12381.1

Basic Information

GenBank IDAEG12381.1
FamilyGH3
Sequence Length886
UniProt IDG0AX42(100,100)Download
Average pLDDT?90.08
CAZy50 ID10057
CAZy50 RepNo, AWL11389.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID693974
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella baltica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVIALRPKT  FSLSLLAVLT  CASLSGCSKT  EQIKAADSQS  VKPSDVAASS  SPNSPNGYSI60
NGKSTDINIW  PQLTIPHKNH  EDVEKRVADL  LAKMTLEQKV  AQMIQPEIRD  ITVEDMRKYG120
FGSYLNGGGS  YPNQDKHATP  ADWIALADAM  YQASMDDSLD  GISIPTMWGT  DAVHGHNNVI180
GATLFPHNIG  LGAAHHPELI  QQIAAITAKE  VMVTGIDWVF  APTVAVVRDD  RWGRTYEGYS240
EDPVIVKSYS  HAIVEGLQGG  NDKDFLSDQH  VIATVKHFLG  DGGTEGGDDQ  GDNIASEQAL300
FDIHAQGYVG  GLTAGAQTVM  ASFNSWHGAK  NHGNPYLLTD  VLEARMGFDG  FVVGDWNGHG360
QVEGCSNESC  PLAVNAGLDV  FMVPTAAWKP  LYENTIAQVK  SGLISQARID  DAVSRILRVK420
IRAGLFEKPS  PAKRPLSGKT  ELIGQASHRD  VARQAVRESL  VLLKNNQHLL  PLSPKAKVLV480
AGDAADNIGK  QSGGWSITWQ  GTDNQNADFP  GATSIYAGIA  KAVSASGGSA  VLSVDGQFDA540
ANKPDVAIVV  FGEEPYAEGN  GDIDNLEYQR  GNKRDLALLQ  KLKAAGIPVV  SVFISGRPLW600
VNPELNASDA  FVAAWLPGTE  GAGISEVLFT  QANGDVQYDF  NGKLSFSWPS  TPQQTQVNVH660
DSDYSPLLPY  GYGLSYADKA  NSTAPAILSN  SLSEDNFSEQ  VQLSQKPLFE  RAVKAPWKML720
IGSVEGDKVS  MEPIASSVQS  NDVVTIKTFD  KQVQEDARHV  SFNGKALGFV  SLQGNFPEDL780
RAYLASKSVL  SMQVKVGSSI  KAPVNVGMTC  EGDCRANVDI  STQLSALSLD  TWSELNIDLT840
CYQGQGIDFG  KIISPFTLSS  SGAVDISFSD  IILKPKTASM  ASVECP886

Predicted 3D structure by AlphaFold2 with pLDDT = 90.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(163-383)

MSVIALRPKT  FSLSLLAVLT  CASLSGCSKT  EQIKAADSQS  VKPSDVAASS  SPNSPNGYSI60
NGKSTDINIW  PQLTIPHKNH  EDVEKRVADL  LAKMTLEQKV  AQMIQPEIRD  ITVEDMRKYG120
FGSYLNGGGS  YPNQDKHATP  ADWIALADAM  YQASMDDSLD  GISIPTMWGT  DAVHGHNNVI180
GATLFPHNIG  LGAAHHPELI  QQIAAITAKE  VMVTGIDWVF  APTVAVVRDD  RWGRTYEGYS240
EDPVIVKSYS  HAIVEGLQGG  NDKDFLSDQH  VIATVKHFLG  DGGTEGGDDQ  GDNIASEQAL300
FDIHAQGYVG  GLTAGAQTVM  ASFNSWHGAK  NHGNPYLLTD  VLEARMGFDG  FVVGDWNGHG360
QVEGCSNESC  PLAVNAGLDV  FMVPTAAWKP  LYENTIAQVK  SGLISQARID  DAVSRILRVK420
IRAGLFEKPS  PAKRPLSGKT  ELIGQASHRD  VARQAVRESL  VLLKNNQHLL  PLSPKAKVLV480
AGDAADNIGK  QSGGWSITWQ  GTDNQNADFP  GATSIYAGIA  KAVSASGGSA  VLSVDGQFDA540
ANKPDVAIVV  FGEEPYAEGN  GDIDNLEYQR  GNKRDLALLQ  KLKAAGIPVV  SVFISGRPLW600
VNPELNASDA  FVAAWLPGTE  GAGISEVLFT  QANGDVQYDF  NGKLSFSWPS  TPQQTQVNVH660
DSDYSPLLPY  GYGLSYADKA  NSTAPAILSN  SLSEDNFSEQ  VQLSQKPLFE  RAVKAPWKML720
IGSVEGDKVS  MEPIASSVQS  NDVVTIKTFD  KQVQEDARHV  SFNGKALGFV  SLQGNFPEDL780
RAYLASKSVL  SMQVKVGSSI  KAPVNVGMTC  EGDCRANVDI  STQLSALSLD  TWSELNIDLT840
CYQGQGIDFG  KIISPFTLSS  SGAVDISFSD  IILKPKTASM  ASVECP886

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help