CAZyme3D

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Entry ID

Information for CAZyme ID: AEE34983.1

Basic Information

GenBank IDAEE34983.1
FamilyCBM45, GH13_6
Sequence Length887
UniProt IDQ94A41(100,100)Download
Average pLDDT?77.06
CAZy50 ID16693
CAZy50 RepNo, CAG1830528.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTVPIESLL  HHSYLRHNSK  VNRGNRSFIP  ISLNLRSHFT  SNKLLHSIGK  SVGVSSMNKS60
PVAIRATSSD  TAVVETAQSD  DVIFKEIFPV  QRIEKAEGKI  YVRLKEVKEK  NWELSVGCSI120
PGKWILHWGV  SYVGDTGSEW  DQPPEDMRPP  GSIAIKDYAI  ETPLKKLSEG  DSFFEVAINL180
NLESSVAALN  FVLKDEETGA  WYQHKGRDFK  VPLVDDVPDN  GNLIGAKKGF  GALGQLSNIP240
LKQDKSSAET  DSIEERKGLQ  EFYEEMPISK  RVADDNSVSV  TARKCPETSK  NIVSIETDLP300
GDVTVHWGVC  KNGTKKWEIP  SEPYPEETSL  FKNKALRTRL  QRKDDGNGSF  GLFSLDGKLE360
GLCFVLKLNE  NTWLNYRGED  FYVPFLTSSS  SPVETEAAQV  SKPKRKTDKE  VSASGFTKEI420
ITEIRNLAID  ISSHKNQKTN  VKEVQENILQ  EIEKLAAEAY  SIFRSTTPAF  SEEGVLEAEA480
DKPDIKISSG  TGSGFEILCQ  GFNWESNKSG  RWYLELQEKA  DELASLGFTV  LWLPPPTESV540
SPEGYMPKDL  YNLNSRYGTI  DELKDTVKKF  HKVGIKVLGD  AVLNHRCAHF  KNQNGVWNLF600
GGRLNWDDRA  VVADDPHFQG  RGNKSSGDNF  HAAPNIDHSQ  DFVRKDIKEW  LCWMMEEVGY660
DGWRLDFVRG  FWGGYVKDYM  DASKPYFAVG  EYWDSLSYTY  GEMDYNQDAH  RQRIVDWINA720
TSGAAGAFDV  TTKGILHTAL  QKCEYWRLSD  PKGKPPGVVG  WWPSRAVTFI  ENHDTGSTQG780
HWRFPEGKEM  QGYAYILTHP  GTPAVFFDHI  FSDYHSEIAA  LLSLRNRQKL  HCRSEVNIDK840
SERDVYAAII  DEKVAMKIGP  GHYEPPNGSQ  NWSVAVEGRD  YKVWETS887

Predicted 3D structure by AlphaFold2 with pLDDT = 77.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM45(126-209)+CBM45(305-381)+GH13_6(521-806)

MSTVPIESLL  HHSYLRHNSK  VNRGNRSFIP  ISLNLRSHFT  SNKLLHSIGK  SVGVSSMNKS60
PVAIRATSSD  TAVVETAQSD  DVIFKEIFPV  QRIEKAEGKI  YVRLKEVKEK  NWELSVGCSI120
PGKWILHWGV  SYVGDTGSEW  DQPPEDMRPP  GSIAIKDYAI  ETPLKKLSEG  DSFFEVAINL180
NLESSVAALN  FVLKDEETGA  WYQHKGRDFK  VPLVDDVPDN  GNLIGAKKGF  GALGQLSNIP240
LKQDKSSAET  DSIEERKGLQ  EFYEEMPISK  RVADDNSVSV  TARKCPETSK  NIVSIETDLP300
GDVTVHWGVC  KNGTKKWEIP  SEPYPEETSL  FKNKALRTRL  QRKDDGNGSF  GLFSLDGKLE360
GLCFVLKLNE  NTWLNYRGED  FYVPFLTSSS  SPVETEAAQV  SKPKRKTDKE  VSASGFTKEI420
ITEIRNLAID  ISSHKNQKTN  VKEVQENILQ  EIEKLAAEAY  SIFRSTTPAF  SEEGVLEAEA480
DKPDIKISSG  TGSGFEILCQ  GFNWESNKSG  RWYLELQEKA  DELASLGFTV  LWLPPPTESV540
SPEGYMPKDL  YNLNSRYGTI  DELKDTVKKF  HKVGIKVLGD  AVLNHRCAHF  KNQNGVWNLF600
GGRLNWDDRA  VVADDPHFQG  RGNKSSGDNF  HAAPNIDHSQ  DFVRKDIKEW  LCWMMEEVGY660
DGWRLDFVRG  FWGGYVKDYM  DASKPYFAVG  EYWDSLSYTY  GEMDYNQDAH  RQRIVDWINA720
TSGAAGAFDV  TTKGILHTAL  QKCEYWRLSD  PKGKPPGVVG  WWPSRAVTFI  ENHDTGSTQG780
HWRFPEGKEM  QGYAYILTHP  GTPAVFFDHI  FSDYHSEIAA  LLSLRNRQKL  HCRSEVNIDK840
SERDVYAAII  DEKVAMKIGP  GHYEPPNGSQ  NWSVAVEGRD  YKVWETS887

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help