CAZyme3D

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Entry ID

Information for CAZyme ID: AEE32368.1

Basic Information

GenBank IDAEE32368.1
FamilyCBM49, GH9
Sequence Length627
UniProt IDQ9M995(100,100)Download
Average pLDDT?89.93
CAZy50 ID45516
CAZy50 RepNo, CAG7875685.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKFGGSLFG  VSLLLSVLLA  AATAAAEYYN  YGSALDKTFL  FFEAQRSGKL  PAAQRVKWRG60
PSGLKDGLAQ  GVSLEGGYYD  AGDHVKFGLP  MAFAVTMLSW  AAVDNRKELS  SSNQMQQTLW120
SIRWGTDYFI  KAHPQPNVLW  GQVGDGESDH  YCWERPEDMT  TSRTAYKLDP  YHPGSDLAGE180
TAAALAAASL  AFKPFNSSYS  ALLLSHAKEL  FSFADKYRGL  YTNSIPNAKA  FYMSSGYSDE240
LLWAAAWLHR  ATGDQYYLKY  AMDNSGYMGG  TGWGVKEFSW  DNKYAGVQIL  LSKILLEGKG300
GIYTSTLKQY  QTKADYFACA  CLKKNGGYNI  QTTPGGLMYV  REWNNLQYAS  AAAYLLAVYS360
DYLSAANAKL  NCPDGLVQPQ  GLLDFARSQA  DYILGKNRQG  MSYVVGYGPK  YPIRVHHRGS420
SIPSIFAQRS  SVSCVQGFDS  WYRRSQGDPN  VIYGALVGGP  DENDNYSDDR  SNYEQSEPTL480
SGTAPLVGLF  AKLYGGSLGS  YGGGSYKPYE  TTKPAASSYK  ATPTTYSPKQ  SGAQIEFLHS540
ITSNWIAGNT  RYYRHKVIIK  NNSQKPISDL  KLKIEDLSGP  IWGLNPTGQK  YTYQLPQWQK600
TLRAGQAYDF  VYVQGGPQAK  VSVLSYN627

Predicted 3D structure by AlphaFold2 with pLDDT = 89.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH9(30-491)+CBM49(535-614)

MRKFGGSLFG  VSLLLSVLLA  AATAAAEYYN  YGSALDKTFL  FFEAQRSGKL  PAAQRVKWRG60
PSGLKDGLAQ  GVSLEGGYYD  AGDHVKFGLP  MAFAVTMLSW  AAVDNRKELS  SSNQMQQTLW120
SIRWGTDYFI  KAHPQPNVLW  GQVGDGESDH  YCWERPEDMT  TSRTAYKLDP  YHPGSDLAGE180
TAAALAAASL  AFKPFNSSYS  ALLLSHAKEL  FSFADKYRGL  YTNSIPNAKA  FYMSSGYSDE240
LLWAAAWLHR  ATGDQYYLKY  AMDNSGYMGG  TGWGVKEFSW  DNKYAGVQIL  LSKILLEGKG300
GIYTSTLKQY  QTKADYFACA  CLKKNGGYNI  QTTPGGLMYV  REWNNLQYAS  AAAYLLAVYS360
DYLSAANAKL  NCPDGLVQPQ  GLLDFARSQA  DYILGKNRQG  MSYVVGYGPK  YPIRVHHRGS420
SIPSIFAQRS  SVSCVQGFDS  WYRRSQGDPN  VIYGALVGGP  DENDNYSDDR  SNYEQSEPTL480
SGTAPLVGLF  AKLYGGSLGS  YGGGSYKPYE  TTKPAASSYK  ATPTTYSPKQ  SGAQIEFLHS540
ITSNWIAGNT  RYYRHKVIIK  NNSQKPISDL  KLKIEDLSGP  IWGLNPTGQK  YTYQLPQWQK600
TLRAGQAYDF  VYVQGGPQAK  VSVLSYN627

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help