CAZyme3D

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Entry ID

Information for CAZyme ID: AEC06396.1

Basic Information

GenBank IDAEC06396.1
FamilyGT37
Sequence Length535
UniProt IDQ9SJP2(100,100)Download
Average pLDDT?87.69
CAZy50 ID10671
CAZy50 RepNo, VDD56044.1
Structure Cluster-
EC Number(s)2.4.1.-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYHIFQISGE  VIKGLGLKTK  ILITIVFSTL  LILSVMLLSF  SNNFNNKLFA  ATINDESETP60
GRDRLIGGLL  TADFDEGSCL  SRYHKTFLYR  KPSPYKPSEY  LVSKLRSYEM  LHKRCGPGTK120
AYKEATKHLS  HDENYNASKS  DGECRYVVWL  ADYGLGNRLL  TLASVFLYAL  LTDRIILVDN180
RKDIGDLLCE  PFPGTSWLLP  LDFPLMKYAD  GYHKGYSRCY  GTMLENHSIN  STSFPPHLYM240
HNLHDSRDSD  KMFFCQKDQS  LIDKVPWLIF  RANVYFVPSL  WFNPTFQTEL  TKLFPQKETV300
FHHLGRYLFH  PKNQVWDIVT  KYYHDHLSKA  DERLGIQIRV  FRDQGGYYQH  VMDQVISCTQ360
REKLLPELAT  QEESKVNISN  IPKSKAVLVT  SLSPEYSKKL  ENMFSERANM  TGEIIKVYQP420
SGERYQQTDK  KVHDQKALAE  MYLLSLTDNI  VASSRSTFGY  VAYSLGGLKP  WLLYLPNDNK480
APDPPCVRST  SMEPCFLTPP  THGCEPDAWG  TESGKVVPFV  RYCEDIWGLK  LFDEL535

Predicted 3D structure by AlphaFold2 with pLDDT = 87.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT37(57-505)

MYHIFQISGE  VIKGLGLKTK  ILITIVFSTL  LILSVMLLSF  SNNFNNKLFA  ATINDESETP60
GRDRLIGGLL  TADFDEGSCL  SRYHKTFLYR  KPSPYKPSEY  LVSKLRSYEM  LHKRCGPGTK120
AYKEATKHLS  HDENYNASKS  DGECRYVVWL  ADYGLGNRLL  TLASVFLYAL  LTDRIILVDN180
RKDIGDLLCE  PFPGTSWLLP  LDFPLMKYAD  GYHKGYSRCY  GTMLENHSIN  STSFPPHLYM240
HNLHDSRDSD  KMFFCQKDQS  LIDKVPWLIF  RANVYFVPSL  WFNPTFQTEL  TKLFPQKETV300
FHHLGRYLFH  PKNQVWDIVT  KYYHDHLSKA  DERLGIQIRV  FRDQGGYYQH  VMDQVISCTQ360
REKLLPELAT  QEESKVNISN  IPKSKAVLVT  SLSPEYSKKL  ENMFSERANM  TGEIIKVYQP420
SGERYQQTDK  KVHDQKALAE  MYLLSLTDNI  VASSRSTFGY  VAYSLGGLKP  WLLYLPNDNK480
APDPPCVRST  SMEPCFLTPP  THGCEPDAWG  TESGKVVPFV  RYCEDIWGLK  LFDEL535

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help