CAZyme3D

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Entry ID

Information for CAZyme ID: ADZ16125.1

Basic Information

GenBank IDADZ16125.1
FamilyGH2
Sequence Length976
UniProt IDF1BX32(100,100)Download
Average pLDDT?89.69
CAZy50 ID15002
CAZy50 RepNo, ATA62819.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3634
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderMalvales
FamilyMalvaceae
GenusGossypium
SpeciesGossypium barbadense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAEIGQKTLL  DSGWLAARST  DVQLTGTQLT  TTYPPTSPTS  PWMEAVVPGT  VLATLVENKV60
VGDPFYGLEN  ETILDIADSG  REYYTFWFFT  KFQCKLSGAQ  HLDLNFRAIN  YSAEVYLNGH120
KRVLPKGMFR  RHSLEVTDIL  NPDGSNLLAV  LVHPPDHPGS  IPPVGGQGGD  HEIGKDVATQ180
YVEGWDWIAP  VRDRNTGIWD  EVSISVTGPV  KIIDPHLVSS  FFDRYTRVYL  HATTELENRS240
SWVAECSLNI  QVTTELEGSV  SLMEHLKTQH  VSIPPRARIQ  YTFPQLFFYK  PNLWWPNGMG300
KQSLYNVSIT  VDVKGHGESD  SWGQLFGFRK  IESHIDSATG  GRLFKVNGQP  IFIRGGNWIL360
SDCLLRLSKE  RYKTDIKFHA  DMNLNMIRCW  GGGLAERPEF  YHYCDVYGLL  VWQEFWITGD420
VDGRGVPVSN  PNGPLDHDLF  MLCAKDTVKL  LRNHPSLALW  VGGNEQVPPA  DINTALKNDL480
KLHPFFESQS  ENITSVEGLS  TAYKDPSQYL  DGTRVYIQGS  MWDGFANGKG  GFTDGPYEIQ540
NPEDPFKDNF  YKYGFNPEVG  SVGIPVAATI  RATMPREGWQ  IPLFKKLPNG  YTEEVPNPIW600
QYHKYLPYSK  PGKVHDQIEL  YGTPEDLDDF  CLKAQLVNYI  QYRALLEGWT  SRMWSKYTGV660
LIWKTQNPWT  GPRGQFYDHL  LDQTAGFFGC  RCAAEPIHVQ  LNLATYFIEV  VNTTAEELSN720
VAIEASVWDL  EGACPYYKVF  DKLSLPPKKV  VSISEMKYPK  SKNPKPVFFL  LLKLYHVSNY780
SIVSRNFYWL  HVSGGDYKLL  EPYRNKRIPL  KITSKTFIKG  SSYEVEMKVL  NKSKKPDPKT840
LTYKNNFAVR  NDDSDFDMTS  LKPIPDTRTD  LKQPTGLFQR  LYRQFSRESD  GLRVAEINGS900
DGGVAFFLNF  SVHGAKLEHE  EGEDSRILPV  HYSDNYFSLV  PGEEMSIKIS  FKVPPGVSPR960
VTLRGWNYHH  GVHTVL976

Predicted 3D structure by AlphaFold2 with pLDDT = 89.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(33-733)

MAEIGQKTLL  DSGWLAARST  DVQLTGTQLT  TTYPPTSPTS  PWMEAVVPGT  VLATLVENKV60
VGDPFYGLEN  ETILDIADSG  REYYTFWFFT  KFQCKLSGAQ  HLDLNFRAIN  YSAEVYLNGH120
KRVLPKGMFR  RHSLEVTDIL  NPDGSNLLAV  LVHPPDHPGS  IPPVGGQGGD  HEIGKDVATQ180
YVEGWDWIAP  VRDRNTGIWD  EVSISVTGPV  KIIDPHLVSS  FFDRYTRVYL  HATTELENRS240
SWVAECSLNI  QVTTELEGSV  SLMEHLKTQH  VSIPPRARIQ  YTFPQLFFYK  PNLWWPNGMG300
KQSLYNVSIT  VDVKGHGESD  SWGQLFGFRK  IESHIDSATG  GRLFKVNGQP  IFIRGGNWIL360
SDCLLRLSKE  RYKTDIKFHA  DMNLNMIRCW  GGGLAERPEF  YHYCDVYGLL  VWQEFWITGD420
VDGRGVPVSN  PNGPLDHDLF  MLCAKDTVKL  LRNHPSLALW  VGGNEQVPPA  DINTALKNDL480
KLHPFFESQS  ENITSVEGLS  TAYKDPSQYL  DGTRVYIQGS  MWDGFANGKG  GFTDGPYEIQ540
NPEDPFKDNF  YKYGFNPEVG  SVGIPVAATI  RATMPREGWQ  IPLFKKLPNG  YTEEVPNPIW600
QYHKYLPYSK  PGKVHDQIEL  YGTPEDLDDF  CLKAQLVNYI  QYRALLEGWT  SRMWSKYTGV660
LIWKTQNPWT  GPRGQFYDHL  LDQTAGFFGC  RCAAEPIHVQ  LNLATYFIEV  VNTTAEELSN720
VAIEASVWDL  EGACPYYKVF  DKLSLPPKKV  VSISEMKYPK  SKNPKPVFFL  LLKLYHVSNY780
SIVSRNFYWL  HVSGGDYKLL  EPYRNKRIPL  KITSKTFIKG  SSYEVEMKVL  NKSKKPDPKT840
LTYKNNFAVR  NDDSDFDMTS  LKPIPDTRTD  LKQPTGLFQR  LYRQFSRESD  GLRVAEINGS900
DGGVAFFLNF  SVHGAKLEHE  EGEDSRILPV  HYSDNYFSLV  PGEEMSIKIS  FKVPPGVSPR960
VTLRGWNYHH  GVHTVL976

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help