CAZyme3D

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Entry ID

Information for CAZyme ID: ADW73237.1

Basic Information

GenBank IDADW73237.1
FamilyGH32
Sequence Length477
UniProt IDA0A0H3FE02(100,100)Download
Average pLDDT?96.94
CAZy50 ID64075
CAZy50 RepNo, WEI57568.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2703885
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella aceris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTYTIAHAEQ  ELQAKHGRVN  LRWYPRYHLA  ARAGWINDPN  GLIWFEGWYH  AFYQHHPYST60
QWGPMHWGHA  RSKDLLHWEH  LPVALAPEGP  EDKDGCFSGS  AVVDGDTLAL  IYTGHKFHGD120
AGNDENLYQV  QCLATSGDGI  HFKREGIIID  TPADLHHFRD  PKVWREGDSW  YMVVGARVGD180
TGQIRLYRSA  DLRQWQDEGI  LDEAEAGMGF  MWECPDFFTL  NGKRVLMFSP  QGIAAQGFEN240
RNLFQSGYLV  GDWQPGEPFV  RAGEFVEMDH  GHDFYAPQSF  LTPDGRRIVI  GWLAMWESPM300
PEQQDGWAGM  LSLPRELSLD  ENNRLQMRPA  KEVEALRQAW  FPWPVSTLKN  QQILMAEKGE360
SMEVALHWDG  ARSDAEQYGL  SLGDGLRVYV  DTQMQRLVLE  RRYPQYGLCG  TRSVPLVPGA420
PLALRVFIDS  SSVEVFVNDG  QACLSSRIYP  DAGRRELNLF  AWHGTATLSD  AGAWQLE477

Predicted 3D structure by AlphaFold2 with pLDDT = 96.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(28-329)

MTYTIAHAEQ  ELQAKHGRVN  LRWYPRYHLA  ARAGWINDPN  GLIWFEGWYH  AFYQHHPYST60
QWGPMHWGHA  RSKDLLHWEH  LPVALAPEGP  EDKDGCFSGS  AVVDGDTLAL  IYTGHKFHGD120
AGNDENLYQV  QCLATSGDGI  HFKREGIIID  TPADLHHFRD  PKVWREGDSW  YMVVGARVGD180
TGQIRLYRSA  DLRQWQDEGI  LDEAEAGMGF  MWECPDFFTL  NGKRVLMFSP  QGIAAQGFEN240
RNLFQSGYLV  GDWQPGEPFV  RAGEFVEMDH  GHDFYAPQSF  LTPDGRRIVI  GWLAMWESPM300
PEQQDGWAGM  LSLPRELSLD  ENNRLQMRPA  KEVEALRQAW  FPWPVSTLKN  QQILMAEKGE360
SMEVALHWDG  ARSDAEQYGL  SLGDGLRVYV  DTQMQRLVLE  RRYPQYGLCG  TRSVPLVPGA420
PLALRVFIDS  SSVEVFVNDG  QACLSSRIYP  DAGRRELNLF  AWHGTATLSD  AGAWQLE477

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help