CAZyme3D

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Entry ID

Information for CAZyme ID: ADW16869.1

Basic Information

GenBank IDADW16869.1
FamilyGT28
Sequence Length364
UniProt IDA0A7U4DNC3(100,100)Download
Average pLDDT?88.83
CAZy50 ID118681
CAZy50 RepNo, ADH86176.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID577650
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobulbia
OrderDesulfobulbales
FamilyDesulfobulbaceae
GenusDesulfobulbus
SpeciesDesulfobulbus propionicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLIVAGGGT  GGHLFPGIAV  ATAMRERVAA  TRVLFIGTSR  LLDQQALAGC  GFELAGLQCG60
GVKGLGTMQR  LRSLLRMPGA  VLEAMRMLRQ  FNPDLVFGVG  GYVTGPVLLA  ARMLGVPIAI120
HEQNSVPGMA  NRLAGRLADK  VFISLPCVPP  FPPAKTVRTG  NPVRREILAA  ASEKTPWPER180
STTLLVLGGS  QGAHRVNLLV  MEAMEQLARQ  GRALHLIHQT  GGADEEQVRT  CYHKLGIDAE240
VTAFIRDMAS  VYARADLVVS  RAGATTLAEL  AVMGLPALLI  PYPYAADDHQ  ATNAEYYVKG300
SGCRMLRESG  LTGEILARSI  SEYLQNPEEL  HTMSANMKTM  AMPDATNRIV  DECLQLATRK360
GWHG364

Predicted 3D structure by AlphaFold2 with pLDDT = 88.83 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(183-345)

MRLIVAGGGT  GGHLFPGIAV  ATAMRERVAA  TRVLFIGTSR  LLDQQALAGC  GFELAGLQCG60
GVKGLGTMQR  LRSLLRMPGA  VLEAMRMLRQ  FNPDLVFGVG  GYVTGPVLLA  ARMLGVPIAI120
HEQNSVPGMA  NRLAGRLADK  VFISLPCVPP  FPPAKTVRTG  NPVRREILAA  ASEKTPWPER180
STTLLVLGGS  QGAHRVNLLV  MEAMEQLARQ  GRALHLIHQT  GGADEEQVRT  CYHKLGIDAE240
VTAFIRDMAS  VYARADLVVS  RAGATTLAEL  AVMGLPALLI  PYPYAADDHQ  ATNAEYYVKG300
SGCRMLRESG  LTGEILARSI  SEYLQNPEEL  HTMSANMKTM  AMPDATNRIV  DECLQLATRK360
GWHG364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help