CAZyme3D

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Entry ID

Information for CAZyme ID: ADV47406.1

Basic Information

GenBank IDADV47406.1
FamilyGH13_19
Sequence Length563
UniProt IDE6X6A6(100,100)Download
Average pLDDT?92.63
CAZy50 ID56973
CAZy50 RepNo, AXT49589.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID688270
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusCellulophaga
SpeciesCellulophaga algicola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKGLLLLLG  FVLFISCEEE  KNTPKPEQSS  TTKNSIVTPK  KNPFVWEGAN  IYFLLTDRFN60
NGDTTNDVNF  ERTEDTGVLR  GFMGGDLKGI  TAKIKEGYFT  KLGINAIWFT  PVVEQIHGAT120
DEGTGNSYGY  HGYWTKDWTA  LDPNFGTRDD  LEELVKTAHN  NGIRVLLDVV  LNHTGPVTEI180
DPVWPEEWVR  TSPTCTFENY  ETTTACTLVK  NLPDIKTESD  EEVALPDHLL  AKWKAEGRLS240
SELDELDLFF  KRSGCSRTSR  AYITKWLTDY  VNDFGIDGFR  VDTVKHTDEN  AWNELYKQAS300
IAFDTWKRKH  PDAVLDNNPF  YMVGEVYNYG  ISSGRTYDFG  DKKVDYYNSG  FKSLINFELK360
TDAKKDYETI  FKKYNTLLQS  KLYGKSVVNY  LTSHDDGAPF  DKERKDPYHA  ANLLLLTPGA420
SQVYYGDESS  RSLTIEGTQG  DATLRSFMNW  KEIDSLPETK  KILAHWQKLG  SFRAKHPAIG480
AGTHKMLSKA  PYVFERTYTN  NEYKDKVVVG  LNLPKGKKSL  NVKGFFGDAT  TLHDAYSDTI540
VVVKKGKVQL  DNDFDIALLE  LIE563

Predicted 3D structure by AlphaFold2 with pLDDT = 92.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_19(180-429)

MKKGLLLLLG  FVLFISCEEE  KNTPKPEQSS  TTKNSIVTPK  KNPFVWEGAN  IYFLLTDRFN60
NGDTTNDVNF  ERTEDTGVLR  GFMGGDLKGI  TAKIKEGYFT  KLGINAIWFT  PVVEQIHGAT120
DEGTGNSYGY  HGYWTKDWTA  LDPNFGTRDD  LEELVKTAHN  NGIRVLLDVV  LNHTGPVTEI180
DPVWPEEWVR  TSPTCTFENY  ETTTACTLVK  NLPDIKTESD  EEVALPDHLL  AKWKAEGRLS240
SELDELDLFF  KRSGCSRTSR  AYITKWLTDY  VNDFGIDGFR  VDTVKHTDEN  AWNELYKQAS300
IAFDTWKRKH  PDAVLDNNPF  YMVGEVYNYG  ISSGRTYDFG  DKKVDYYNSG  FKSLINFELK360
TDAKKDYETI  FKKYNTLLQS  KLYGKSVVNY  LTSHDDGAPF  DKERKDPYHA  ANLLLLTPGA420
SQVYYGDESS  RSLTIEGTQG  DATLRSFMNW  KEIDSLPETK  KILAHWQKLG  SFRAKHPAIG480
AGTHKMLSKA  PYVFERTYTN  NEYKDKVVVG  LNLPKGKKSL  NVKGFFGDAT  TLHDAYSDTI540
VVVKKGKVQL  DNDFDIALLE  LIE563

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help