CAZyme3D

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Entry ID

Information for CAZyme ID: ADV43394.1

Basic Information

GenBank IDADV43394.1
FamilyGH84
Sequence Length851
UniProt IDE6SUN0(100,100)Download
Average pLDDT?92.26
CAZy50 ID20869
CAZy50 RepNo, AEA21503.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID693979
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides helcogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDYKKIWIAG  IACTCIAGSL  TAQETDFDLS  AQRSEIQNVS  VVPGKKIDHQ  GIIINPTPQQ60
MTLDKNNRLD  ISGGLMLNDK  QHKFESDLNF  VKLQKKGIKL  DINFGIKAAG  KQGVKAMSGA120
YSLTIGEKGI  SIVGYDERGA  FYGIQTLRQL  TESSATNGNK  LPYLTINDYP  DLPNRGVVEG180
FYGTPWSHAV  RLSLIDFYGK  FKMNTYLYGP  KDDPYHSSPN  WRLPYPKEET  KNIQELVQAC240
QRNRVDFVWA  IHPGKDIKWN  EEDYQNLINK  LNWMYDLGVR  AFAVFFDDIE  GEGTNPLKQT300
ELLNRLHDDF  AKVKGDISSL  TVCPTDYSKL  WANPTPQGSL  AIYGKALNPD  IKVFWTGDVV360
CSDLTRETLN  WVNSRIQRPA  YYWWNYPVTD  YVRHIILQGP  VYGLDTTLTA  KETCGLISNP420
MEHGEASKLA  LYGVADYAWN  VADYNPIDNW  ERGLGELAPK  AKEAYRTFAI  HSSDTENGYR480
RDESWETKTF  RLTNWTDEAA  QALQQEFERV  EKAPIEMEKH  CTNQALLNEL  RPWLKEFGKL540
GSRGRCALEL  ARQYRSNQDN  ATFWKNFVSN  RMNEKDRKAY  EAHKSGTMKL  QPFYEDIMDD600
MSYEFFKKLT  GKIPMDYKGI  GSFGNSNTIQ  TKLMLDKDTT  TYYTSGIGQK  ANDWIGVDLR660
AIRSVSEIAI  RQGRNSVDDV  DYFDHAVLEY  SEDGKNWHQL  TEELSKQYVI  HWKGNAVKAR720
YVRLKRLDSQ  RTNYASVRTF  EVNPLRVSNL  GFRLNADNAQ  EALLAFDNNP  NSSFTMRDSL780
VFEVPQGIKS  YVLLLNRPAE  CLKLKQLDTK  GILVSEISIT  SPFTKIELAP  NTTEIKIEGM840
AEIVEIIANP  Q851

Predicted 3D structure by AlphaFold2 with pLDDT = 92.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH84(175-469)+CBM32(630-738)

MDYKKIWIAG  IACTCIAGSL  TAQETDFDLS  AQRSEIQNVS  VVPGKKIDHQ  GIIINPTPQQ60
MTLDKNNRLD  ISGGLMLNDK  QHKFESDLNF  VKLQKKGIKL  DINFGIKAAG  KQGVKAMSGA120
YSLTIGEKGI  SIVGYDERGA  FYGIQTLRQL  TESSATNGNK  LPYLTINDYP  DLPNRGVVEG180
FYGTPWSHAV  RLSLIDFYGK  FKMNTYLYGP  KDDPYHSSPN  WRLPYPKEET  KNIQELVQAC240
QRNRVDFVWA  IHPGKDIKWN  EEDYQNLINK  LNWMYDLGVR  AFAVFFDDIE  GEGTNPLKQT300
ELLNRLHDDF  AKVKGDISSL  TVCPTDYSKL  WANPTPQGSL  AIYGKALNPD  IKVFWTGDVV360
CSDLTRETLN  WVNSRIQRPA  YYWWNYPVTD  YVRHIILQGP  VYGLDTTLTA  KETCGLISNP420
MEHGEASKLA  LYGVADYAWN  VADYNPIDNW  ERGLGELAPK  AKEAYRTFAI  HSSDTENGYR480
RDESWETKTF  RLTNWTDEAA  QALQQEFERV  EKAPIEMEKH  CTNQALLNEL  RPWLKEFGKL540
GSRGRCALEL  ARQYRSNQDN  ATFWKNFVSN  RMNEKDRKAY  EAHKSGTMKL  QPFYEDIMDD600
MSYEFFKKLT  GKIPMDYKGI  GSFGNSNTIQ  TKLMLDKDTT  TYYTSGIGQK  ANDWIGVDLR660
AIRSVSEIAI  RQGRNSVDDV  DYFDHAVLEY  SEDGKNWHQL  TEELSKQYVI  HWKGNAVKAR720
YVRLKRLDSQ  RTNYASVRTF  EVNPLRVSNL  GFRLNADNAQ  EALLAFDNNP  NSSFTMRDSL780
VFEVPQGIKS  YVLLLNRPAE  CLKLKQLDTK  GILVSEISIT  SPFTKIELAP  NTTEIKIEGM840
AEIVEIIANP  Q851

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help