CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ADV42088.1

Basic Information

GenBank IDADV42088.1
FamilyGH125
Sequence Length483
UniProt IDE6SRS9(100,100)Download
Average pLDDT?93.21
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID693979
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides helcogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGKNMSRRHF  LKTSGLALAA  MAVNPALTFA  SSGMPEGKYM  SRRPAKDKRH  FTSKAVEAAI60
EENKTKIKDD  KLRWMFENCF  PNTLDTTVRY  KMRNGIPDTF  VITGDIDAMW  LRDSSAQVWP120
YLPLMKDDKE  LQLLIAGLVN  RQAECIRIDP  YANAFNDGPL  GSYWETDHTQ  YMAKELHERK180
WEIDSLCYPI  RLAYHYWSLT  KDTAIFSSNW  HEAMKLVVQT  FKEQQRKQNL  GPYSFTRDCD240
RPTDSQINGG  WGAPVKPVGL  IVSSFRPSDD  STQYGFLIPS  NMFAVVSLRQ  LAEIETVVYK300
NGDFAAECIA  LSDEVDSAIR  KYGTFNHPVC  GRIYAFEVDG  FGNALCMDDA  NVPSLLAAPY360
LGYCSCKDAI  YQNTRKMIWS  DNNPYFFKGK  AGEGVGGPHV  GLDHIWPMSI  IMKAFTTDDV420
QEIRACLKQL  RDTDGGTGFM  HESFHSENAG  KFTRSWFAWV  NTLFGELILR  IIREHPNLLS480
QAL483

Predicted 3D structure by AlphaFold2 with pLDDT = 93.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(69-469)

MGKNMSRRHF  LKTSGLALAA  MAVNPALTFA  SSGMPEGKYM  SRRPAKDKRH  FTSKAVEAAI60
EENKTKIKDD  KLRWMFENCF  PNTLDTTVRY  KMRNGIPDTF  VITGDIDAMW  LRDSSAQVWP120
YLPLMKDDKE  LQLLIAGLVN  RQAECIRIDP  YANAFNDGPL  GSYWETDHTQ  YMAKELHERK180
WEIDSLCYPI  RLAYHYWSLT  KDTAIFSSNW  HEAMKLVVQT  FKEQQRKQNL  GPYSFTRDCD240
RPTDSQINGG  WGAPVKPVGL  IVSSFRPSDD  STQYGFLIPS  NMFAVVSLRQ  LAEIETVVYK300
NGDFAAECIA  LSDEVDSAIR  KYGTFNHPVC  GRIYAFEVDG  FGNALCMDDA  NVPSLLAAPY360
LGYCSCKDAI  YQNTRKMIWS  DNNPYFFKGK  AGEGVGGPHV  GLDHIWPMSI  IMKAFTTDDV420
QEIRACLKQL  RDTDGGTGFM  HESFHSENAG  KFTRSWFAWV  NTLFGELILR  IIREHPNLLS480
QAL483

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help