CAZyme3D

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Entry ID

Information for CAZyme ID: ADT97551.1

Basic Information

GenBank IDADT97551.1
FamilyGH130
Sequence Length491
UniProt IDE6TCW3(100,100)Download
Average pLDDT?93.26
CAZy50 ID59416
CAZy50 RepNo, QKE85095.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID278137
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium gilvum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLAGERLAT  RSPQRVAADP  SRVVTRLFVP  GQEGFEAQDS  RAGAVLSRIL  SLTDDEVRAT60
LHDVLSRFDG  RHRDLKATLR  RHAGEFADRL  DKDCELDESR  MLLVGATFTN  EYAIEGAALC120
NPSMVAHPDQ  SDVAAGSLRF  VMSVRGIGEG  HRSTIGFRSG  VVDSAGNATV  DEAARFAGTG180
RMRPTMLEAA  VFRTELREQG  RGGEAADYVF  DALGELFTWS  DLDEQLDKLH  DHLRTRGHVE240
ETITVIRSIA  ARAYAVEFPS  DINLSECVLW  PAMDAEHAGM  EDARFVRFVD  DGSVSYHATY300
TAYSGSHISQ  QLLTTTDFRT  FTSGPLVGRA  AANKGLALFP  RRINGRYAAM  SRSDRETNTV360
AFADHLSVWP  TASPCQAPAE  VWETLQLGNC  GPPIETGEGW  LVLTHGVGPM  RTYSIGAILL420
DLDDPTRVIG  RLRRPLLTPE  PHERNGYVPN  VVYSCGALVH  AGTLVIPIGI  CDSAIGVATV480
PLADLMGELG  R491

Predicted 3D structure by AlphaFold2 with pLDDT = 93.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(265-486)

MTLAGERLAT  RSPQRVAADP  SRVVTRLFVP  GQEGFEAQDS  RAGAVLSRIL  SLTDDEVRAT60
LHDVLSRFDG  RHRDLKATLR  RHAGEFADRL  DKDCELDESR  MLLVGATFTN  EYAIEGAALC120
NPSMVAHPDQ  SDVAAGSLRF  VMSVRGIGEG  HRSTIGFRSG  VVDSAGNATV  DEAARFAGTG180
RMRPTMLEAA  VFRTELREQG  RGGEAADYVF  DALGELFTWS  DLDEQLDKLH  DHLRTRGHVE240
ETITVIRSIA  ARAYAVEFPS  DINLSECVLW  PAMDAEHAGM  EDARFVRFVD  DGSVSYHATY300
TAYSGSHISQ  QLLTTTDFRT  FTSGPLVGRA  AANKGLALFP  RRINGRYAAM  SRSDRETNTV360
AFADHLSVWP  TASPCQAPAE  VWETLQLGNC  GPPIETGEGW  LVLTHGVGPM  RTYSIGAILL420
DLDDPTRVIG  RLRRPLLTPE  PHERNGYVPN  VVYSCGALVH  AGTLVIPIGI  CDSAIGVATV480
PLADLMGELG  R491

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help