Information for CAZyme ID: ADP70573.1
Basic Information
| GenBank ID | ADP70573.1 |
| Family | GT20 |
| Sequence Length | 775 |
| UniProt ID | E3I5Y0(100,100) |
| Average pLDDT? | 84.84 |
| CAZy50 ID | 27997 |
| CAZy50 Rep | No, QQN61522.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 648757 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Hyphomicrobiaceae |
| Genus | Rhodomicrobium |
| Species | Rhodomicrobium vannielii |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRWPTSFLAS LPIIGGDSSL SRFPVWRNPT VRMFVRYASA ALVATVLIVL ALAPYASALV | 60 |
| EQWSRNDVEL RSRLVFNSIR HSFSELLAAN DKAGIEDLFA RVANDDRVLG LGFCVDPGVL | 120 |
| RFQTKLMPST FSCKKAARSE TASFSSITDD GTHLIAASFP IAVRNAKGHL VILHDLSFAT | 180 |
| KRSAEARTFL TAALVGIVLV STLLAALAVL AVVRRWLIGL RESLSSAAQG QNIEEMTSRL | 240 |
| GPIGEELRLA LRKMDLNRVA SVDTERTEWT AETIREVMNG ELANAQVIVV SNREPYIHNH | 300 |
| EADGIKLQIP ASGLVSALEP VTRACGGTWI AHGSGSADQE MADSEGRIRV PPDNPGYTLR | 360 |
| RVWISEHEQE GYYYSLANEG LWPLCHIAFV RPTFRAADWD TYRAINERFA KAVVDEATTD | 420 |
| SPIVLVQDYH FALLPRMVRA RLPKATIITF WHIPWPNSET FSIFPWKEEI VQGLLGSSIV | 480 |
| GFHTQFHCNN FIETADRFIE SRIDREHASI TLSGRETFIR PYPISIEWPP AALGAQKPVA | 540 |
| ECRSAVRERL GIPAETHLAV GIERFDYTKG ILDRMLAIDA LLTAHPEWKG RFVFVQAAAP | 600 |
| TRSKLPAYAA LQAEAQRLAA EINDRHGING VAPVHLVIRH HDPAEVFELF RAADVCIVSS | 660 |
| LHDGMNLVAK EFVASRDDEQ GVLALSTFAG ASRELSEALM VNPYDPHSMG VAIERALTMP | 720 |
| AAEQRERMRL MRDLIRNRNV YRWAGQMLLD ASRLRKKQHV LEIAALHQNG GKRRS | 775 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.84 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT20(284-750)
| MRWPTSFLAS LPIIGGDSSL SRFPVWRNPT VRMFVRYASA ALVATVLIVL ALAPYASALV | 60 |
| EQWSRNDVEL RSRLVFNSIR HSFSELLAAN DKAGIEDLFA RVANDDRVLG LGFCVDPGVL | 120 |
| RFQTKLMPST FSCKKAARSE TASFSSITDD GTHLIAASFP IAVRNAKGHL VILHDLSFAT | 180 |
| KRSAEARTFL TAALVGIVLV STLLAALAVL AVVRRWLIGL RESLSSAAQG QNIEEMTSRL | 240 |
| GPIGEELRLA LRKMDLNRVA SVDTERTEWT AETIREVMNG ELANAQVIVV SNREPYIHNH | 300 |
| EADGIKLQIP ASGLVSALEP VTRACGGTWI AHGSGSADQE MADSEGRIRV PPDNPGYTLR | 360 |
| RVWISEHEQE GYYYSLANEG LWPLCHIAFV RPTFRAADWD TYRAINERFA KAVVDEATTD | 420 |
| SPIVLVQDYH FALLPRMVRA RLPKATIITF WHIPWPNSET FSIFPWKEEI VQGLLGSSIV | 480 |
| GFHTQFHCNN FIETADRFIE SRIDREHASI TLSGRETFIR PYPISIEWPP AALGAQKPVA | 540 |
| ECRSAVRERL GIPAETHLAV GIERFDYTKG ILDRMLAIDA LLTAHPEWKG RFVFVQAAAP | 600 |
| TRSKLPAYAA LQAEAQRLAA EINDRHGING VAPVHLVIRH HDPAEVFELF RAADVCIVSS | 660 |
| LHDGMNLVAK EFVASRDDEQ GVLALSTFAG ASRELSEALM VNPYDPHSMG VAIERALTMP | 720 |
| AAEQRERMRL MRDLIRNRNV YRWAGQMLLD ASRLRKKQHV LEIAALHQNG GKRRS | 775 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.