CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ADP70573.1

Basic Information

GenBank IDADP70573.1
FamilyGT20
Sequence Length775
UniProt IDE3I5Y0(100,100)Download
Average pLDDT?84.84
CAZy50 ID27997
CAZy50 RepNo, QQN61522.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID648757
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusRhodomicrobium
SpeciesRhodomicrobium vannielii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRWPTSFLAS  LPIIGGDSSL  SRFPVWRNPT  VRMFVRYASA  ALVATVLIVL  ALAPYASALV60
EQWSRNDVEL  RSRLVFNSIR  HSFSELLAAN  DKAGIEDLFA  RVANDDRVLG  LGFCVDPGVL120
RFQTKLMPST  FSCKKAARSE  TASFSSITDD  GTHLIAASFP  IAVRNAKGHL  VILHDLSFAT180
KRSAEARTFL  TAALVGIVLV  STLLAALAVL  AVVRRWLIGL  RESLSSAAQG  QNIEEMTSRL240
GPIGEELRLA  LRKMDLNRVA  SVDTERTEWT  AETIREVMNG  ELANAQVIVV  SNREPYIHNH300
EADGIKLQIP  ASGLVSALEP  VTRACGGTWI  AHGSGSADQE  MADSEGRIRV  PPDNPGYTLR360
RVWISEHEQE  GYYYSLANEG  LWPLCHIAFV  RPTFRAADWD  TYRAINERFA  KAVVDEATTD420
SPIVLVQDYH  FALLPRMVRA  RLPKATIITF  WHIPWPNSET  FSIFPWKEEI  VQGLLGSSIV480
GFHTQFHCNN  FIETADRFIE  SRIDREHASI  TLSGRETFIR  PYPISIEWPP  AALGAQKPVA540
ECRSAVRERL  GIPAETHLAV  GIERFDYTKG  ILDRMLAIDA  LLTAHPEWKG  RFVFVQAAAP600
TRSKLPAYAA  LQAEAQRLAA  EINDRHGING  VAPVHLVIRH  HDPAEVFELF  RAADVCIVSS660
LHDGMNLVAK  EFVASRDDEQ  GVLALSTFAG  ASRELSEALM  VNPYDPHSMG  VAIERALTMP720
AAEQRERMRL  MRDLIRNRNV  YRWAGQMLLD  ASRLRKKQHV  LEIAALHQNG  GKRRS775

Predicted 3D structure by AlphaFold2 with pLDDT = 84.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT20(284-750)

MRWPTSFLAS  LPIIGGDSSL  SRFPVWRNPT  VRMFVRYASA  ALVATVLIVL  ALAPYASALV60
EQWSRNDVEL  RSRLVFNSIR  HSFSELLAAN  DKAGIEDLFA  RVANDDRVLG  LGFCVDPGVL120
RFQTKLMPST  FSCKKAARSE  TASFSSITDD  GTHLIAASFP  IAVRNAKGHL  VILHDLSFAT180
KRSAEARTFL  TAALVGIVLV  STLLAALAVL  AVVRRWLIGL  RESLSSAAQG  QNIEEMTSRL240
GPIGEELRLA  LRKMDLNRVA  SVDTERTEWT  AETIREVMNG  ELANAQVIVV  SNREPYIHNH300
EADGIKLQIP  ASGLVSALEP  VTRACGGTWI  AHGSGSADQE  MADSEGRIRV  PPDNPGYTLR360
RVWISEHEQE  GYYYSLANEG  LWPLCHIAFV  RPTFRAADWD  TYRAINERFA  KAVVDEATTD420
SPIVLVQDYH  FALLPRMVRA  RLPKATIITF  WHIPWPNSET  FSIFPWKEEI  VQGLLGSSIV480
GFHTQFHCNN  FIETADRFIE  SRIDREHASI  TLSGRETFIR  PYPISIEWPP  AALGAQKPVA540
ECRSAVRERL  GIPAETHLAV  GIERFDYTKG  ILDRMLAIDA  LLTAHPEWKG  RFVFVQAAAP600
TRSKLPAYAA  LQAEAQRLAA  EINDRHGING  VAPVHLVIRH  HDPAEVFELF  RAADVCIVSS660
LHDGMNLVAK  EFVASRDDEQ  GVLALSTFAG  ASRELSEALM  VNPYDPHSMG  VAIERALTMP720
AAEQRERMRL  MRDLIRNRNV  YRWAGQMLLD  ASRLRKKQHV  LEIAALHQNG  GKRRS775

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help