CAZyme3D

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Entry ID

Information for CAZyme ID: ADO73468.1

Basic Information

GenBank IDADO73468.1
FamilyGH16_3
Sequence Length300
UniProt IDE3FVS8(100,100)Download
Average pLDDT?87.47
CAZy50 ID79627
CAZy50 RepNo, ATB32146.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID378806
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyArchangiaceae
GenusStigmatella
SpeciesStigmatella aurantiaca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNMIFNSKRQ  SGFKHLVAWG  LGTLLAASGC  GGEAGQPNDE  VETVTQEAQT  RAGWVQIWSD60
EFNGTSVDTS  NWSYVTNIHV  NNEQQQYTTS  SQNVSVNNGT  LKITARLQSN  NGYPFTSGRL120
ESAGKRQFGH  TRIEARIKLP  VGAGLWPAFW  LLGNDINSVG  WPACGELDIM  ENVGYSNWVS180
GALHGPGYSG  NTPINGRFYP  NSSVSNFHVY  RAEFSPTDVK  WYIDDVLVKT  TLKSEVTRYG240
AWVYDKPFYI  ILNLAVGGSY  PQGQNGATSP  YPGVPQSTVD  LIRNTPQTME  VDWVRVYQWR300
300

Predicted 3D structure by AlphaFold2 with pLDDT = 87.47 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_3(58-297)

MNMIFNSKRQ  SGFKHLVAWG  LGTLLAASGC  GGEAGQPNDE  VETVTQEAQT  RAGWVQIWSD60
EFNGTSVDTS  NWSYVTNIHV  NNEQQQYTTS  SQNVSVNNGT  LKITARLQSN  NGYPFTSGRL120
ESAGKRQFGH  TRIEARIKLP  VGAGLWPAFW  LLGNDINSVG  WPACGELDIM  ENVGYSNWVS180
GALHGPGYSG  NTPINGRFYP  NSSVSNFHVY  RAEFSPTDVK  WYIDDVLVKT  TLKSEVTRYG240
AWVYDKPFYI  ILNLAVGGSY  PQGQNGATSP  YPGVPQSTVD  LIRNTPQTME  VDWVRVYQWR300
300

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help