CAZyme3D

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Entry ID

Information for CAZyme ID: ADL03119.1

Basic Information

GenBank IDADL03119.1
FamilyGH170
Sequence Length364
UniProt IDD9R406(100,100)Download
Average pLDDT?94.19
CAZy50 ID123352
CAZy50 RepNo, UWO74333.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID610130
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusLacrimispora
SpeciesLacrimispora saccharolytica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGRLGISLYP  EHSTPERDKE  YIRLAGKYGF  QRIFTCLLSV  GNKDKEEIIN  EFRDMIDTAH60
ESGMEVILDV  APPVFDALGA  SYDNLAPFQE  MHADGIRLDV  GFDGMKEAAM  SYNQEGLKIE120
LNASTDPSYV  ANIMNHHPVP  ERIITCHNFY  PQKYTGISLE  HFDFCNKEMK  KHGLKVAAFV180
SSNNEGTFGP  WPVNEGLCTL  EMHRGLPIDA  QVRHMLATRM  VDDVIIANAY  ASEKELKACA240
SVTPGKLMFG  LCLEKELTEI  EREILYFDRQ  HVIRGDISEY  MIRSTWPRVS  FADKSVPPAN300
TRDLKRGDVV  ILNDGYSRYK  GELHVVLKDM  PNDGRKNVIG  HIPDYEMVLL  NYIAPWKIFG360
FIEV364

Predicted 3D structure by AlphaFold2 with pLDDT = 94.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH170(3-361)

MGRLGISLYP  EHSTPERDKE  YIRLAGKYGF  QRIFTCLLSV  GNKDKEEIIN  EFRDMIDTAH60
ESGMEVILDV  APPVFDALGA  SYDNLAPFQE  MHADGIRLDV  GFDGMKEAAM  SYNQEGLKIE120
LNASTDPSYV  ANIMNHHPVP  ERIITCHNFY  PQKYTGISLE  HFDFCNKEMK  KHGLKVAAFV180
SSNNEGTFGP  WPVNEGLCTL  EMHRGLPIDA  QVRHMLATRM  VDDVIIANAY  ASEKELKACA240
SVTPGKLMFG  LCLEKELTEI  EREILYFDRQ  HVIRGDISEY  MIRSTWPRVS  FADKSVPPAN300
TRDLKRGDVV  ILNDGYSRYK  GELHVVLKDM  PNDGRKNVIG  HIPDYEMVLL  NYIAPWKIFG360
FIEV364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help