CAZyme3D

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Entry ID

Information for CAZyme ID: ADJ50354.1

Basic Information

GenBank IDADJ50354.1
FamilyCBM32, CBM35, GH29
Sequence Length936
UniProt IDA0A0H3DKW2(100,100)Download
Average pLDDT?92.65
CAZy50 ID14144
CAZy50 RepNo, AZM49237.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID749927
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis mediterranei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRIRLLACLA  AAVALVASLV  SPANAELYHP  RQDWLRASTA  GLFLHWGMFT  APRHTDCAAW60
EHDVTDGGWT  PDYWIDEATK  LGASYVVLTT  FHSRLGYARP  WPSKIPGSCS  TQRDFLGELI120
AAGHAKGVRV  MLYMTDDPQW  HNETGHESLD  SAAYSAYKGH  PVDLTTRPGF  GEYSYDLFDE180
VMDRYSDLAG  FWIDNDNEYW  EQHGLYEHIR  EKRPSWLLSN  NNEDTPIMDT  VSNEQKTGMT240
PSYDYPQAVY  TPMPRLTEAD  YKLPTNGDWW  YSGGDQAVDV  RLSTGRYITN  AGSSIKSLMA300
ETAMLNGKFP  PQQEAFNNFM  ASWTQPIRES  LEGTEGGGYM  YGGLQPGFWN  DGAHGVITVK360
PGARTQYVHV  VTRPSTNLVR  LRDNGYRVTG  VADLRTGKPM  RFAQSGGYLS  ILDIQNWDTY420
DTVFKVDIAG  QQYFYDKSTI  KATASASADG  HPAANLVDGS  YLNYWDAGGQ  LPVSVTLDLG480
RKRSTAYLAV  HERESSPTYA  RESFGRAEDS  ARIKDYRVHA  SDDGKNWRTV  RTGALPSNRG540
VQFIDVGEVH  ARYLKLEVLN  TWSGPQAKPF  YRQLALDEID  VAYGYPDPRG  EVPLEAESWR600
NGFEGKATPV  WCEACSGTNA  VTGLDRGAVV  FRDVQATGPS  RLQLDTSGPG  TLSVSVNGAA660
PIAVTAPGAI  PVPLNAGANT  IKVSGTADLD  RIAVAPMPPE  SYTPKTTLTV  QPAGVQWVSP720
GQQSLRITAS  LRLDVDDPID  QVSLAPVVPA  GWTVTGGPVT  ASALGLGQVL  SGSWTVTAPA780
AQDVSIPVTA  SFRTLGRAKS  VSKPVLVKPR  PADRVFMREA  EDSANDIGDA  GVTSCSPCSG840
GQKVRNIGPG  AAVTFPGVTV  PAAGPYTLYL  DFTVNGDRSY  FVSVNGGAPA  EVKVSGVGNN900
TPYTTSVPVT  LTAGANTIRI  GNDGAGAPDL  DRISLG936

Predicted 3D structure by AlphaFold2 with pLDDT = 92.65 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH29(24-330)+CBM32(442-560)+CBM35(831-935)

MRIRLLACLA  AAVALVASLV  SPANAELYHP  RQDWLRASTA  GLFLHWGMFT  APRHTDCAAW60
EHDVTDGGWT  PDYWIDEATK  LGASYVVLTT  FHSRLGYARP  WPSKIPGSCS  TQRDFLGELI120
AAGHAKGVRV  MLYMTDDPQW  HNETGHESLD  SAAYSAYKGH  PVDLTTRPGF  GEYSYDLFDE180
VMDRYSDLAG  FWIDNDNEYW  EQHGLYEHIR  EKRPSWLLSN  NNEDTPIMDT  VSNEQKTGMT240
PSYDYPQAVY  TPMPRLTEAD  YKLPTNGDWW  YSGGDQAVDV  RLSTGRYITN  AGSSIKSLMA300
ETAMLNGKFP  PQQEAFNNFM  ASWTQPIRES  LEGTEGGGYM  YGGLQPGFWN  DGAHGVITVK360
PGARTQYVHV  VTRPSTNLVR  LRDNGYRVTG  VADLRTGKPM  RFAQSGGYLS  ILDIQNWDTY420
DTVFKVDIAG  QQYFYDKSTI  KATASASADG  HPAANLVDGS  YLNYWDAGGQ  LPVSVTLDLG480
RKRSTAYLAV  HERESSPTYA  RESFGRAEDS  ARIKDYRVHA  SDDGKNWRTV  RTGALPSNRG540
VQFIDVGEVH  ARYLKLEVLN  TWSGPQAKPF  YRQLALDEID  VAYGYPDPRG  EVPLEAESWR600
NGFEGKATPV  WCEACSGTNA  VTGLDRGAVV  FRDVQATGPS  RLQLDTSGPG  TLSVSVNGAA660
PIAVTAPGAI  PVPLNAGANT  IKVSGTADLD  RIAVAPMPPE  SYTPKTTLTV  QPAGVQWVSP720
GQQSLRITAS  LRLDVDDPID  QVSLAPVVPA  GWTVTGGPVT  ASALGLGQVL  SGSWTVTAPA780
AQDVSIPVTA  SFRTLGRAKS  VSKPVLVKPR  PADRVFMREA  EDSANDIGDA  GVTSCSPCSG840
GQKVRNIGPG  AAVTFPGVTV  PAAGPYTLYL  DFTVNGDRSY  FVSVNGGAPA  EVKVSGVGNN900
TPYTTSVPVT  LTAGANTIRI  GNDGAGAPDL  DRISLG936

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help