Information for CAZyme ID: ADG29074.1
Basic Information
| GenBank ID | ADG29074.1 |
| Family | CBM13 |
| Sequence Length | 529 |
| UniProt ID | D6MWK8(100,100) |
| Average pLDDT? | 90.88 |
| CAZy50 ID | 54437 |
| CAZy50 Rep | No, AET98835.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 3988 |
| Kingdom | Eukaryota |
| Phylum | Streptophyta |
| Class | Magnoliopsida |
| Order | Malpighiales |
| Family | Euphorbiaceae |
| Genus | Ricinus |
| Species | Ricinus communis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| GSTSGWSFTL EDNNIFPKQY PIINFTTAGA TVQSYTNFIR AVRGRLTTGA DVRHEIPVLP | 60 |
| NRVGLPINQR FILVELSNHA ELSVTLALDV TNAYVVGYRA GNSAYFFHPD NQEDAEAITH | 120 |
| LFTDVQNRYT FAFGGNYDRL EQLAGNLREN IELGNGPLEE AISALYYYST GGTQLPTLAR | 180 |
| SFIICIQMIS EAARFQYIEG EMRTRIRYNR RSAPDPSVIT LENSWGRLST AIQESNQGAF | 240 |
| ASPIQLQRRN GSKFSVYDVS ILIPIIALMV YRCAPPPSSQ FSLLIRPVVP NFNADVCMDP | 300 |
| EPIVRIVGRN GLCVDVRDGR FHNGNAIQLW PCKSNTDANQ LWTLKRDNTI RSNGKCITTY | 360 |
| GYSPGVYVMI YDCNTAATDA TRWQIWDNGT IINPRSSLVL AATSGNSGTT LTVQTNIYAV | 420 |
| SQGWLPTNNT QPFVTTIVGL YGLCLQANSG QVWIEDCSSE KAERQWALYA DGSIRPQQNR | 480 |
| DNCLTSDSNI RETVVKILSC GPASSGQRWM FKNDGTILNS YSGLVLDVR | 529 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.88 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM13(305-430)+CBM13(441-528)
| GSTSGWSFTL EDNNIFPKQY PIINFTTAGA TVQSYTNFIR AVRGRLTTGA DVRHEIPVLP | 60 |
| NRVGLPINQR FILVELSNHA ELSVTLALDV TNAYVVGYRA GNSAYFFHPD NQEDAEAITH | 120 |
| LFTDVQNRYT FAFGGNYDRL EQLAGNLREN IELGNGPLEE AISALYYYST GGTQLPTLAR | 180 |
| SFIICIQMIS EAARFQYIEG EMRTRIRYNR RSAPDPSVIT LENSWGRLST AIQESNQGAF | 240 |
| ASPIQLQRRN GSKFSVYDVS ILIPIIALMV YRCAPPPSSQ FSLLIRPVVP NFNADVCMDP | 300 |
| EPIVRIVGRN GLCVDVRDGR FHNGNAIQLW PCKSNTDANQ LWTLKRDNTI RSNGKCITTY | 360 |
| GYSPGVYVMI YDCNTAATDA TRWQIWDNGT IINPRSSLVL AATSGNSGTT LTVQTNIYAV | 420 |
| SQGWLPTNNT QPFVTTIVGL YGLCLQANSG QVWIEDCSSE KAERQWALYA DGSIRPQQNR | 480 |
| DNCLTSDSNI RETVVKILSC GPASSGQRWM FKNDGTILNS YSGLVLDVR | 529 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.