CAZyme3D

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Entry ID

Information for CAZyme ID: ADF53258.1

Basic Information

GenBank IDADF53258.1
FamilyGH2
Sequence Length617
UniProt IDD5BGS7(100,100)Download
Average pLDDT?93.57
CAZy50 ID45510
CAZy50 RepNo, QEC73448.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID655815
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusZunongwangia
SpeciesZunongwangia profunda

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIFKKIFVTF  LVLCAVTAFA  QENLIVNTQN  RKQVSLNGTW  HYIIDPYETG  FYDYRYKEKG60
EKDAEAYWNN  PEPHGKTDRK  EHGYNNDYSI  QVPGDWNSQD  DVFKYYEGTV  WYQREFDKPK120
LDENERIFLY  FGAVNYEAHV  YLNGKKLGMH  KGGFTPFNFE  ISPGMLKDKG  NFLVVKVDNK180
RYADEVPTLN  TDWWNYGGIT  RDVKLIITPQ  NFIQQYAIHL  KQSQDIEKSL  KRKRFNISGY240
FKLNTTAAEE  KITIEIPEIG  FKENVDIRDS  EGSFDLEAKK  LELWSPENPK  LYKVMFTLGE300
HTLTDKIGFR  KVEVSGKDVL  LNGKEIFMRG  ISIHEEIAPE  IRRAKNSADA  DKLFGWAKDL360
NVNMVRLAHY  PHNEYMTRAA  DSLGLLVWSE  IPVYWTIDFK  NDEVLEKAKK  QLDEMIIRDQ420
NKASVIIWSV  GNETPVSEAR  TKFMKSLVMH  AKEKDDTRLI  SAALEVGYNR  GRNYIDDPLG480
EYTDIVSVNE  YLGWYGDLPH  AKVKSKWETA  YDKPLFFSET  GAGAKGGFHA  DKETRWSEEF540
QEWYFEETLK  MMENMPENFT  GLSPWILVDF  RSPKRNNPKY  QEGWNRKGLI  DDKGNKKKAF600
FTLKKYYEKK  EEEYKKR617

Predicted 3D structure by AlphaFold2 with pLDDT = 93.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(25-607)

MIFKKIFVTF  LVLCAVTAFA  QENLIVNTQN  RKQVSLNGTW  HYIIDPYETG  FYDYRYKEKG60
EKDAEAYWNN  PEPHGKTDRK  EHGYNNDYSI  QVPGDWNSQD  DVFKYYEGTV  WYQREFDKPK120
LDENERIFLY  FGAVNYEAHV  YLNGKKLGMH  KGGFTPFNFE  ISPGMLKDKG  NFLVVKVDNK180
RYADEVPTLN  TDWWNYGGIT  RDVKLIITPQ  NFIQQYAIHL  KQSQDIEKSL  KRKRFNISGY240
FKLNTTAAEE  KITIEIPEIG  FKENVDIRDS  EGSFDLEAKK  LELWSPENPK  LYKVMFTLGE300
HTLTDKIGFR  KVEVSGKDVL  LNGKEIFMRG  ISIHEEIAPE  IRRAKNSADA  DKLFGWAKDL360
NVNMVRLAHY  PHNEYMTRAA  DSLGLLVWSE  IPVYWTIDFK  NDEVLEKAKK  QLDEMIIRDQ420
NKASVIIWSV  GNETPVSEAR  TKFMKSLVMH  AKEKDDTRLI  SAALEVGYNR  GRNYIDDPLG480
EYTDIVSVNE  YLGWYGDLPH  AKVKSKWETA  YDKPLFFSET  GAGAKGGFHA  DKETRWSEEF540
QEWYFEETLK  MMENMPENFT  GLSPWILVDF  RSPKRNNPKY  QEGWNRKGLI  DDKGNKKKAF600
FTLKKYYEKK  EEEYKKR617

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help