CAZyme3D

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Entry ID

Information for CAZyme ID: ADF52483.1

Basic Information

GenBank IDADF52483.1
FamilyGH125
Sequence Length473
UniProt IDD5BAX0(100,100)Download
Average pLDDT?94.20
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID655815
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusZunongwangia
SpeciesZunongwangia profunda

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRRKFIQNS  ALFGSLAMIN  PKVSLASSLE  KYPVVRTPKG  ERNFESKAIE  KAIKEFGKKV60
NDEELAWLFN  NCFPNTLDTT  VTYTSKNGRP  DTYVITGDID  AMWLRDSSAQ  VWPYMAFADE120
DKDLQHLIAG  VINRQTQYIL  KDPYANAFYD  DPNKKGEWTT  DLTDMKPGVH  ERKWEIDSLC180
YPIRLGYNYW  KTTGDTAPFD  EDWQKAIKAI  LGVFKDQQKK  NDRGPYHFQR  ETAKATDTRA240
LHGYGYPVNP  VGLICSAFRP  SDDATVFSFL  IPSNFFAVVS  LKQAAEMMKT  LANDSNTASE300
LLSLAKEVDN  ALKKHAIVQH  PKYGKIYAFE  IDGFGNHLLM  DDANVPSLLS  LPYLDALPVD360
DEIYQNTRAF  IWSTDNPFFF  KGTAAEGVGG  PHVGMDMVWP  MSITMRGLTS  TSDAEIKECV420
KMLKSTHGDT  GFMHETFHKD  DPTNFSRSWF  AWANTLFGEF  IWKTYKESPE  LLG473

Predicted 3D structure by AlphaFold2 with pLDDT = 94.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(62-461)

MQRRKFIQNS  ALFGSLAMIN  PKVSLASSLE  KYPVVRTPKG  ERNFESKAIE  KAIKEFGKKV60
NDEELAWLFN  NCFPNTLDTT  VTYTSKNGRP  DTYVITGDID  AMWLRDSSAQ  VWPYMAFADE120
DKDLQHLIAG  VINRQTQYIL  KDPYANAFYD  DPNKKGEWTT  DLTDMKPGVH  ERKWEIDSLC180
YPIRLGYNYW  KTTGDTAPFD  EDWQKAIKAI  LGVFKDQQKK  NDRGPYHFQR  ETAKATDTRA240
LHGYGYPVNP  VGLICSAFRP  SDDATVFSFL  IPSNFFAVVS  LKQAAEMMKT  LANDSNTASE300
LLSLAKEVDN  ALKKHAIVQH  PKYGKIYAFE  IDGFGNHLLM  DDANVPSLLS  LPYLDALPVD360
DEIYQNTRAF  IWSTDNPFFF  KGTAAEGVGG  PHVGMDMVWP  MSITMRGLTS  TSDAEIKECV420
KMLKSTHGDT  GFMHETFHKD  DPTNFSRSWF  AWANTLFGEF  IWKTYKESPE  LLG473

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help