CAZyme3D

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Entry ID

Information for CAZyme ID: ADE57605.1

Basic Information

GenBank IDADE57605.1
FamilyGT4
Sequence Length336
UniProt IDD5EGC3(100,100)Download
Average pLDDT?96.04
CAZy50 ID130056
CAZy50 RepNo, AFM21217.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID572547
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilyAminobacteriaceae
GenusAminobacterium
SpeciesAminobacterium colombiense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKIIQLLPEF  IEGGVERHVL  GLSNELSKMG  HTVLVVSGGG  KLQEKLENVE  HWALPVYQKN60
PLTVIYAAIK  IAMRIKREGW  ELIHAHSRVP  AWIAWWASRL  SGIPFIITAH  STYSKNMGIA120
PFKKALGAIS  ISNWVQDYLD  HYLPQKRVVI  FNGMPPLQNQ  WKGSLQSTPF  LFLFIGRLTK180
IKGLHIIMEA  LKDCSFHDWR  LNVVGDGPQR  EELETFCHEN  HLSERVSFYG  FQNNPDKWMA240
QCSCLLFPSL  SEGMGLTLMR  GIQMGVPVLA  SDLPPVRELC  KNPEELIPPG  KVELWKNGLL300
EILKSRETRQ  HFFQEKISGE  KEMAERVASF  YRKIIF336

Predicted 3D structure by AlphaFold2 with pLDDT = 96.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(169-311)

MKIIQLLPEF  IEGGVERHVL  GLSNELSKMG  HTVLVVSGGG  KLQEKLENVE  HWALPVYQKN60
PLTVIYAAIK  IAMRIKREGW  ELIHAHSRVP  AWIAWWASRL  SGIPFIITAH  STYSKNMGIA120
PFKKALGAIS  ISNWVQDYLD  HYLPQKRVVI  FNGMPPLQNQ  WKGSLQSTPF  LFLFIGRLTK180
IKGLHIIMEA  LKDCSFHDWR  LNVVGDGPQR  EELETFCHEN  HLSERVSFYG  FQNNPDKWMA240
QCSCLLFPSL  SEGMGLTLMR  GIQMGVPVLA  SDLPPVRELC  KNPEELIPPG  KVELWKNGLL300
EILKSRETRQ  HFFQEKISGE  KEMAERVASF  YRKIIF336

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help