CAZyme3D

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Entry ID

Information for CAZyme ID: ADC62436.1

Basic Information

GenBank IDADC62436.1
FamilyGT35
Sequence Length837
UniProt IDD3RTC7(100,100)Download
Average pLDDT?93.89
CAZy50 ID16113
CAZy50 RepNo, QFY42352.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID572477
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusAllochromatium
SpeciesAllochromatium vinosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTPNPTESL  DSERERTRTG  LSKAALKQDF  LDNLFYIQGR  FREVATPHDL  YMAAAFTTRD60
RLLKHWVESA  QVFKTSHART  VCYLSAEYLL  GPHLACNLVN  LGITEAAREA  GEELGLDLDA120
ILEEEEEPGL  GNGGLGRLAA  CFMESLSTCR  IPAIGYGIRY  EFGIFDQAIE  DGWQVEKTDN180
WLRNGNPWEI  PRPKIRFSVG  YGGYTESYRD  DTGRSRVCWR  PAQVINGMAY  DTPILGYGTA240
NANLLRLWKA  EAPTSFDFQA  FNTGDYYGAV  YANIQAETIS  KVLYPNDEPE  AGKELRLKQQ300
YFFVSCSMQD  MIRLHLNTVG  PLESFADKFV  AQLNDTHPAL  AVAELMRLLL  DEHVMSWEQS360
WDITHRTFCY  TNHTLLPEAL  ETWSVSLFER  LLPRHLEIVY  EINRRFLDEV  RMRFLGDEAR420
VWRMSLIAEG  GERRIRMANL  AVVGSRAVNG  VAELHSELVK  ATLFKDFAEL  WPERFHNVTN480
GVTPRRFMVV  ANPRLAQLIT  KTCGHDDWIL  DLERVRELEA  HVDDAGLLED  WRAVKRAAKQ540
DLATWMQQAA  GVRLDPESLF  DVQAKRFHEY  KRQHLKVLHI  IRCYQRIKQG  QSQDLVPRAF600
IFGGKAAPGY  FMAKLIIKLI  NAVGEVVNND  PQVNGWIRVA  FMPDFNVKNG  QRLYPAADLS660
EQISLAGKEA  SGTGNMKFSM  NGALTIGTLD  GANVEIREAV  GAENFFLFGM  TAEEALQRQM720
SGYRPWEFYQ  SDAELKSDID  LINSGLFSHG  DTQLFRPLTD  NLVNHDPFMV  LADYRAYLDC780
QKTVSETYRD  TPRWTRMSIL  NVARIGRFSS  DRAIREYAEH  IWKVTPKRIE  PAHHSQS837

Predicted 3D structure by AlphaFold2 with pLDDT = 93.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(112-824)

MSTPNPTESL  DSERERTRTG  LSKAALKQDF  LDNLFYIQGR  FREVATPHDL  YMAAAFTTRD60
RLLKHWVESA  QVFKTSHART  VCYLSAEYLL  GPHLACNLVN  LGITEAAREA  GEELGLDLDA120
ILEEEEEPGL  GNGGLGRLAA  CFMESLSTCR  IPAIGYGIRY  EFGIFDQAIE  DGWQVEKTDN180
WLRNGNPWEI  PRPKIRFSVG  YGGYTESYRD  DTGRSRVCWR  PAQVINGMAY  DTPILGYGTA240
NANLLRLWKA  EAPTSFDFQA  FNTGDYYGAV  YANIQAETIS  KVLYPNDEPE  AGKELRLKQQ300
YFFVSCSMQD  MIRLHLNTVG  PLESFADKFV  AQLNDTHPAL  AVAELMRLLL  DEHVMSWEQS360
WDITHRTFCY  TNHTLLPEAL  ETWSVSLFER  LLPRHLEIVY  EINRRFLDEV  RMRFLGDEAR420
VWRMSLIAEG  GERRIRMANL  AVVGSRAVNG  VAELHSELVK  ATLFKDFAEL  WPERFHNVTN480
GVTPRRFMVV  ANPRLAQLIT  KTCGHDDWIL  DLERVRELEA  HVDDAGLLED  WRAVKRAAKQ540
DLATWMQQAA  GVRLDPESLF  DVQAKRFHEY  KRQHLKVLHI  IRCYQRIKQG  QSQDLVPRAF600
IFGGKAAPGY  FMAKLIIKLI  NAVGEVVNND  PQVNGWIRVA  FMPDFNVKNG  QRLYPAADLS660
EQISLAGKEA  SGTGNMKFSM  NGALTIGTLD  GANVEIREAV  GAENFFLFGM  TAEEALQRQM720
SGYRPWEFYQ  SDAELKSDID  LINSGLFSHG  DTQLFRPLTD  NLVNHDPFMV  LADYRAYLDC780
QKTVSETYRD  TPRWTRMSIL  NVARIGRFSS  DRAIREYAEH  IWKVTPKRIE  PAHHSQS837

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help