CAZyme3D

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Entry ID

Information for CAZyme ID: ADB80110.1

Basic Information

GenBank IDADB80110.1
FamilyGH5_26
Sequence Length343
UniProt IDD3JVU1(100,100)Download
Average pLDDT?89.12
CAZy50 ID134015
CAZy50 RepNo, ACA61152.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID358574
Kingdom
Phylum
Class
Order
Family
Genus
Speciesuncultured microorganism

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTLKSLGMKR  MASLIAGLSL  LVLTSCSAGE  GWVKVEGNKF  LDPQGKELVF  RGLCFSDPVK60
LVREGQWNER  YFAEAADWGA  NVVRFAVHPS  NLNSLGWEET  FQAMDQGIAW  AKRYGMYVIM120
DWHSIGNLKD  ELYTSPMYNT  TREETFKFWR  TVAERYKDEP  TVALYELFNE  PTVTAPDVGS180
CTWTEWKEIQ  ESLIDAIRAI  NPHAVCLCAG  FNWAYDLTPV  AEEPVDRPNI  AYVSHPYPMK240
RSEPWEEQWE  KDFGYVADTY  PVICTEIGYC  LADEPGAHIP  VMSTDVYGEH  ITQYFEQKGI300
SFTVWCFDTS  WAPMLIKRLG  FHAHDPGPVL  QSLFTGESPI  VRP343

Predicted 3D structure by AlphaFold2 with pLDDT = 89.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_26(40-317)

MTLKSLGMKR  MASLIAGLSL  LVLTSCSAGE  GWVKVEGNKF  LDPQGKELVF  RGLCFSDPVK60
LVREGQWNER  YFAEAADWGA  NVVRFAVHPS  NLNSLGWEET  FQAMDQGIAW  AKRYGMYVIM120
DWHSIGNLKD  ELYTSPMYNT  TREETFKFWR  TVAERYKDEP  TVALYELFNE  PTVTAPDVGS180
CTWTEWKEIQ  ESLIDAIRAI  NPHAVCLCAG  FNWAYDLTPV  AEEPVDRPNI  AYVSHPYPMK240
RSEPWEEQWE  KDFGYVADTY  PVICTEIGYC  LADEPGAHIP  VMSTDVYGEH  ITQYFEQKGI300
SFTVWCFDTS  WAPMLIKRLG  FHAHDPGPVL  QSLFTGESPI  VRP343

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help