CAZyme3D

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Entry ID

Information for CAZyme ID: ACS89391.1

Basic Information

GenBank IDACS89391.1
FamilyGH50
Sequence Length491
UniProt IDC6A196(100,100)Download
Average pLDDT?88.92
CAZy50 ID68833
CAZy50 RepNo, AJC71238.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID604354
KingdomArchaea
PhylumEuryarchaeota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus sibiricus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLRKAVYGM  ILGVILISTL  FLGCLGGNQT  TSTSKTTEKT  TTTYIETSTT  TTQSEERIKP60
QVEFPEGYSK  FGGWKELRVE  SSGYFRVEVI  NGKYWLVDPE  GYVFVSKGVN  AINYLGDHSP120
ALGYSPYYLN  VLRKYGSIEG  WINTTTRRFV  EWGFNTVGAW  SSPELYVMLP  YTLLLDIGAS180
YGFNWESGAM  PDIFEKDFEE  YVKKAVSFKV  APLKDDPLII  GYFTDNELRW  GPDWRSGNHL240
LDDFIKLPPD  APGKRVAVDV  IKDIFNGDIS  KLNEELKTSY  TSFDDLLNYT  GKLPSSAPFN300
EARREFARRY  AERYFSVVTK  AIREVDPNHL  ILGVRFAVAP  FIRPPDVVFE  VAGKYVDVIS360
LNLYNFEVAP  KEYLDHIHNI  TGRPIMITEF  SFRAMDSGLP  NTRGAGITVQ  TQKERAEYTR420
KFIESFMKLP  YAVGYHWFKW  SDQPKEGRFD  GENSNYGLVN  IKDEPYEEMV  IMFEELNRKL480
EEIHLTGYEG  D491

Predicted 3D structure by AlphaFold2 with pLDDT = 88.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(124-480)

MNLRKAVYGM  ILGVILISTL  FLGCLGGNQT  TSTSKTTEKT  TTTYIETSTT  TTQSEERIKP60
QVEFPEGYSK  FGGWKELRVE  SSGYFRVEVI  NGKYWLVDPE  GYVFVSKGVN  AINYLGDHSP120
ALGYSPYYLN  VLRKYGSIEG  WINTTTRRFV  EWGFNTVGAW  SSPELYVMLP  YTLLLDIGAS180
YGFNWESGAM  PDIFEKDFEE  YVKKAVSFKV  APLKDDPLII  GYFTDNELRW  GPDWRSGNHL240
LDDFIKLPPD  APGKRVAVDV  IKDIFNGDIS  KLNEELKTSY  TSFDDLLNYT  GKLPSSAPFN300
EARREFARRY  AERYFSVVTK  AIREVDPNHL  ILGVRFAVAP  FIRPPDVVFE  VAGKYVDVIS360
LNLYNFEVAP  KEYLDHIHNI  TGRPIMITEF  SFRAMDSGLP  NTRGAGITVQ  TQKERAEYTR420
KFIESFMKLP  YAVGYHWFKW  SDQPKEGRFD  GENSNYGLVN  IKDEPYEEMV  IMFEELNRKL480
EEIHLTGYEG  D491

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help