CAZyme3D

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Entry ID

Information for CAZyme ID: ACL41370.1

Basic Information

GenBank IDACL41370.1
FamilyPL11_1
Sequence Length672
UniProt IDB8HH79(100,100)Download
Average pLDDT?91.13
CAZy50 ID1195
CAZy50 RepNo, AFK65224.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID452863
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusPseudarthrobacter
SpeciesPseudarthrobacter chlorophenolicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVYHSQHSPT  SRAGRARKAA  PLAAAAASLT  AAALAFTGVP  LAQADQATTS  GQPAAQGQAA60
KSALKRQVEN  LDRAPVAVLT  DQGVTLGWRM  LGLDKDSVGF  QVLRDGRQIT  KEPIRDTTTF120
VDPDGTAQSK  YVIKTVGNGN  GQDKLSAGFT  PLAQNYLAIK  LDKPADGVSK  DGKPYTYSAN180
DSTVADLDGD  GAYEIIQLWN  PSNAQDNSKS  GFTGNVYVDA  YKMDGTKLWR  IDLGKNIRAG240
AHYTQMLAYD  FDGDGKAEVS  FKTADGTTDA  AGTVIGDAAA  DYRNSAGYVL  SGPEYLTVFN300
GATGTIMDTV  AYDPPRGSVA  AWGDNYGNRV  DRFLAGVAYL  DGEKPSLMFS  RGYYTRTVLV360
TYDLVDGKLV  KRWTFDSDIA  GAEYKGQGNH  NLSVADVDQD  GKDEFVFGSM  TIDDDGKPLY420
NTKLGHGDAI  HTGDLDPSRP  GLETFAVHES  MSQSGNRGAT  FRDAATGEVL  WSIPAIKDTG480
RGATGDIDPR  FSGSESWAVG  GDAAWNSSVG  YLMSAKGERI  SDKIPAANFM  AWWDGDLLRE540
IVDHEFDAEA  GMGVPTISKW  NWETETSDRL  LTATGARTNN  HTKGNPSLQA  DLLGDWREEL600
VFPSTDSTEL  RIYTSTSPTE  VRLRTLMHDP  MYRTGVARET  VGYNQPPHPS  FFIGEGMETP660
AAPSVFYAGK  AK672

Predicted 3D structure by AlphaFold2 with pLDDT = 91.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL11(65-669)

MVYHSQHSPT  SRAGRARKAA  PLAAAAASLT  AAALAFTGVP  LAQADQATTS  GQPAAQGQAA60
KSALKRQVEN  LDRAPVAVLT  DQGVTLGWRM  LGLDKDSVGF  QVLRDGRQIT  KEPIRDTTTF120
VDPDGTAQSK  YVIKTVGNGN  GQDKLSAGFT  PLAQNYLAIK  LDKPADGVSK  DGKPYTYSAN180
DSTVADLDGD  GAYEIIQLWN  PSNAQDNSKS  GFTGNVYVDA  YKMDGTKLWR  IDLGKNIRAG240
AHYTQMLAYD  FDGDGKAEVS  FKTADGTTDA  AGTVIGDAAA  DYRNSAGYVL  SGPEYLTVFN300
GATGTIMDTV  AYDPPRGSVA  AWGDNYGNRV  DRFLAGVAYL  DGEKPSLMFS  RGYYTRTVLV360
TYDLVDGKLV  KRWTFDSDIA  GAEYKGQGNH  NLSVADVDQD  GKDEFVFGSM  TIDDDGKPLY420
NTKLGHGDAI  HTGDLDPSRP  GLETFAVHES  MSQSGNRGAT  FRDAATGEVL  WSIPAIKDTG480
RGATGDIDPR  FSGSESWAVG  GDAAWNSSVG  YLMSAKGERI  SDKIPAANFM  AWWDGDLLRE540
IVDHEFDAEA  GMGVPTISKW  NWETETSDRL  LTATGARTNN  HTKGNPSLQA  DLLGDWREEL600
VFPSTDSTEL  RIYTSTSPTE  VRLRTLMHDP  MYRTGVARET  VGYNQPPHPS  FFIGEGMETP660
AAPSVFYAGK  AK672

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help