CAZyme3D

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Entry ID

Information for CAZyme ID: ACJ75601.1

Basic Information

GenBank IDACJ75601.1
FamilyGT28
Sequence Length334
UniProt IDB7IHN7(100,100)Download
Average pLDDT?93.20
CAZy50 ID131285
CAZy50 RepNo, QIV79006.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID484019
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyFervidobacteriaceae
GenusThermosipho
SpeciesThermosipho africanus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIKIAVAGGV  TGGHLYPALA  VLKELEKLTP  IDVLYFTVSG  KLEERVLKDY  NYKKVSLKIQ60
GLKRPVYSIE  NIKRLFKIFN  ANNIVLKELK  KFKPDIVFVT  GGYVSYPVGT  AAKKLKIPLY120
IQEQNVIPGL  ANIKLSSFAK  KVFVSFEESK  KYFQRDVVVA  GNPILICHKE  NLNFEKKTIL180
IVGGSGGSEF  LNSLACKLSN  KLKDYHFILS  SGRKEVPCKS  ENLTILDYIE  NMSDYYSAVS240
CAITRGGATT  VSELIFFDTP  SIIIPWEGST  EAHQIENAKQ  IEKLGLGYVI  REKEVNIDEI300
ANKIIELSNR  ERKGSPKTNP  AILIAKEIKN  EVLK334

Predicted 3D structure by AlphaFold2 with pLDDT = 93.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(178-312)

MIKIAVAGGV  TGGHLYPALA  VLKELEKLTP  IDVLYFTVSG  KLEERVLKDY  NYKKVSLKIQ60
GLKRPVYSIE  NIKRLFKIFN  ANNIVLKELK  KFKPDIVFVT  GGYVSYPVGT  AAKKLKIPLY120
IQEQNVIPGL  ANIKLSSFAK  KVFVSFEESK  KYFQRDVVVA  GNPILICHKE  NLNFEKKTIL180
IVGGSGGSEF  LNSLACKLSN  KLKDYHFILS  SGRKEVPCKS  ENLTILDYIE  NMSDYYSAVS240
CAITRGGATT  VSELIFFDTP  SIIIPWEGST  EAHQIENAKQ  IEKLGLGYVI  REKEVNIDEI300
ANKIIELSNR  ERKGSPKTNP  AILIAKEIKN  EVLK334

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help