CAZyme3D

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Entry ID

Information for CAZyme ID: ACJ62119.1

Basic Information

GenBank IDACJ62119.1
FamilyCBM18, GH19
Sequence Length318
UniProt IDB8QVH0(100,100)Download
Average pLDDT?90.70
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76912
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusZea
SpeciesZea mays

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

LAVVVAMLAT  AFFAVPARAE  QCGSQAGGAL  CPNCLCCSQF  GWCGSTSDYC  GSGCQSQCSG60
SCGSTPNPPS  SGGVASIIPE  SLFNQMLLHR  NDAACPANGF  YTYAGFIAAA  NAFPGFGTTG120
APDVQKRELA  AFLAQTSHET  TGGWATAPDG  PYAWGYCFKE  EQGGASGPDY  CEPSAQWPCA180
AGKKYYGRGP  IQISYNYNYG  PAGQAIGAGI  LANPDLVATD  PTVSFETAVW  FWMTPQSPKP240
SCHDVMTGQW  TPSAADTAAG  RLPGYGVVTN  IINGGLECGH  GADSRVADRI  GFYKRYCDLL300
GVSYGDNLDC  ANQTPFNG318

Predicted 3D structure by AlphaFold2 with pLDDT = 90.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(21-58)+GH19(74-310)

LAVVVAMLAT  AFFAVPARAE  QCGSQAGGAL  CPNCLCCSQF  GWCGSTSDYC  GSGCQSQCSG60
SCGSTPNPPS  SGGVASIIPE  SLFNQMLLHR  NDAACPANGF  YTYAGFIAAA  NAFPGFGTTG120
APDVQKRELA  AFLAQTSHET  TGGWATAPDG  PYAWGYCFKE  EQGGASGPDY  CEPSAQWPCA180
AGKKYYGRGP  IQISYNYNYG  PAGQAIGAGI  LANPDLVATD  PTVSFETAVW  FWMTPQSPKP240
SCHDVMTGQW  TPSAADTAAG  RLPGYGVVTN  IINGGLECGH  GADSRVADRI  GFYKRYCDLL300
GVSYGDNLDC  ANQTPFNG318

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help