CAZyme3D

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Entry ID

Information for CAZyme ID: ACJ62088.1

Basic Information

GenBank IDACJ62088.1
FamilyCBM18, GH19
Sequence Length321
UniProt IDB8QVF2(100,100)Download
Average pLDDT?90.58
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76912
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusZea
SpeciesZea mays

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMRALAVVAM  VATAFFAVPA  RAEQCGSQAG  GALCPNCLCC  SQFGWCGSTS  DYCGSGCQSQ60
CSGSCGSTPN  PPSSGGVASI  ISESLFNQML  LHRNDAACPA  NGFYTYAGFI  AAANAFPGFG120
TTGAPDVQKR  ELAAFLAQTS  HETTGGWATA  PDGPYAWGYC  FKEEQGGASG  PDYCEPSAQW180
PCAAGKKYYG  RGPIQISYNY  NYGPAGQAIG  AGILANPDMV  ATDPTVSFET  AVWFWMTPQS240
PKPSCHDVMT  GQWTPSAADT  AAGRLPGYGV  VTNIINGGLE  CGHGADSRVA  DRIGFYKRYC300
DLLGVSYGDN  LDCANQTPFN  G321

Predicted 3D structure by AlphaFold2 with pLDDT = 90.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(24-61)+GH19(77-313)

MMRALAVVAM  VATAFFAVPA  RAEQCGSQAG  GALCPNCLCC  SQFGWCGSTS  DYCGSGCQSQ60
CSGSCGSTPN  PPSSGGVASI  ISESLFNQML  LHRNDAACPA  NGFYTYAGFI  AAANAFPGFG120
TTGAPDVQKR  ELAAFLAQTS  HETTGGWATA  PDGPYAWGYC  FKEEQGGASG  PDYCEPSAQW180
PCAAGKKYYG  RGPIQISYNY  NYGPAGQAIG  AGILANPDMV  ATDPTVSFET  AVWFWMTPQS240
PKPSCHDVMT  GQWTPSAADT  AAGRLPGYGV  VTNIINGGLE  CGHGADSRVA  DRIGFYKRYC300
DLLGVSYGDN  LDCANQTPFN  G321

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help